CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0537300

Gene name
Homology with Arabidopsis Similar to At1g17285: unknown protein (HF=2e+0)

Module size 17 genes

NF 0.52

%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.98 Os02g0537300 9630.m03174 - - 2e+0 At1g17285 unknown protein O.I. H.G. S.X.
0.71 89.6 0.98 Os02g0710401 9630.m04683 - - 5e-1 At3g44290 anac060 (Arabidopsis NAC domain containing protein 60) O.I. H.G. S.X.
0.65 83.8 0.98 Os08g0117500 9636.m00143 - - 9e-1 At4g30370 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.61 81.2 0.98 Os04g0129800 9632.m00313 - - 2e+0 At4g12860 UNE14 (unfertilized embryo sac 14) O.I. H.G. S.X.
0.56 76.3 0.99 Os12g0577000 9640.m03777 - Targeting for Xklp2 family protein 5e-2 At5g38980 unknown protein O.I. H.G. S.X.
0.54 71.9 0.98 Os01g0368400 9629.m02584 - - 3e-1 At5g44450 methyltransferase O.I. H.G. S.X.
0.53 71.3 0.98 Os12g0607200 9640.m04054 - - 4e-2 At2g21780 unknown protein O.I. H.G. S.X.
0.51 68.7 0.98 Os11g0467600 9639.m02515 - - 2e+0 At5g23230 NIC2 (NICOTINAMIDASE 2) O.I. H.G. S.X.
0.51 68.7 0.98 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - O.I. H.G. S.X.
0.51 68.7 0.98 Os02g0776200 9630.m05301 - - 2e-3 At3g26932 DRB3 (dsRNA-binding protein 3) O.I. H.G. S.X.
0.50 68.0 0.98 Os06g0494600 9634.m02868 - - 3e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.49 64.4 0.98 Os03g0762200 AK107203.1 - Hypothetical protein 5e-5 At5g67400 peroxidase 73 (PER73) (P73) (PRXR11) O.I. H.G. S.X.
0.42 53.9 0.98 Os11g0201200 9639.m00897 - - 6e-1 At1g33710 - O.I. H.G. S.X.
0.39 48.3 0.98 Os08g0432200 9636.m03359 - - 4e+0 At4g28520 CRU3 (CRUCIFERIN 3) O.I. H.G. S.X.
0.37 45.0 0.98 Os12g0162300 9640.m00572 - - 8e-1 At5g54430 universal stress protein (USP) family protein O.I. H.G. S.X.
0.35 41.7 0.99 Os03g0354700 9631.m02326 - - 6e+0 At3g60966 protein binding / zinc ion binding O.I. H.G. S.X.
0.31 34.5 0.98 Os11g0114000 9640.m00124 - Zn-finger, RING domain containing protein 8e-1 At5g44450 methyltransferase O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	91.1	0.98	Os02g0537300	9630.m03174	-	-	2e+0	At1g17285	unknown protein	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os02g0710401	9630.m04683	-	-	5e-1	At3g44290	anac060 (Arabidopsis NAC domain containing protein 60)	O.I.	H.G.	S.X.
0.65	83.8	0.98	Os08g0117500	9636.m00143	-	-	9e-1	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os04g0129800	9632.m00313	-	-	2e+0	At4g12860	UNE14 (unfertilized embryo sac 14)	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os12g0577000	9640.m03777	-	Targeting for Xklp2 family protein	5e-2	At5g38980	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os01g0368400	9629.m02584	-	-	3e-1	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os12g0607200	9640.m04054	-	-	4e-2	At2g21780	unknown protein	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os11g0467600	9639.m02515	-	-	2e+0	At5g23230	NIC2 (NICOTINAMIDASE 2)	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os07g0248401	9635.m01434	-	-	3e+0	At1g70400	-	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os02g0776200	9630.m05301	-	-	2e-3	At3g26932	DRB3 (dsRNA-binding protein 3)	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os06g0494600	9634.m02868	-	-	3e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.49	64.4	0.98	Os03g0762200	AK107203.1	-	Hypothetical protein	5e-5	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.
0.42	53.9	0.98	Os11g0201200	9639.m00897	-	-	6e-1	At1g33710	-	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os08g0432200	9636.m03359	-	-	4e+0	At4g28520	CRU3 (CRUCIFERIN 3)	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os12g0162300	9640.m00572	-	-	8e-1	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os03g0354700	9631.m02326	-	-	6e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os11g0114000	9640.m00124	-	Zn-finger, RING domain containing protein	8e-1	At5g44450	methyltransferase	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.9 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
16.9	98.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8	98.5	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os02g0537300
Gene name
Homology with Arabidopsis	Similar to At1g17285: unknown protein (HF=2e+0)
Module size	17 genes
NF	0.52
%ile	68.8

Co-expression analysis

Gene ID Os02g0537300 Gene name Homology with ArabidopsisSimilar to At1g17285: unknown protein (HF=2e+0) Module size 17 genes NF 0.52 %ile 68.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0537300

Gene name
Homology with Arabidopsis Similar to At1g17285: unknown protein (HF=2e+0)

Module size 17 genes

NF 0.52

%ile 68.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays