CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0534800

Gene name
Homology with Arabidopsis Similar to At3g11510: 40S ribosomal protein S14 (RPS14B) (HF=3e-67)

Module size 6 genes

NF 0.56

%ile 75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.61 81.2 0.98 Os06g0701400 AK121229.1 - 60S acidic ribosomal protein P3 (P1/P2-like) (P3A) 1e-1 At3g28560 - O.I. H.G. S.X.
0.50 68.0 0.99 Os04g0598200 BX897823 - 60S ribosomal protein L12 2e-21 At3g53430 60S ribosomal protein L12 (RPL12B) O.I. H.G. S.X.
0.40 51.1 0.99 Os01g0686800 D38231.1 - Guanine nucleotide-binding protein betasubunit-like protein (GPB-LR) (RWD) 1e-23 At1g18080 ATARCA O.I. H.G. S.X.
0.38 46.9 0.98 Os03g0343500 AB117995.1 - 60S ribosomal protein L22-2 2e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) O.I. H.G. S.X.
0.33 38.8 0.99 Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
77.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.5 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage