CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0530100

Gene name
Homology with Arabidopsis Similar to At3g56240: CCH (COPPER CHAPERONE) (HF=2e-9)

Module size 6 genes

NF 0.06

%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.82 Os02g0530100 AF198626.1 - Copper chaperone homolog CCH 2e-9 At3g56240 CCH (COPPER CHAPERONE) O.I. H.G. S.X.
0.33 38.8 0.92 Os06g0238300 AK107758.1 - FMN-binding split barrel domain containing protein 2e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) O.I. H.G. S.X.
0.13 8.2 0.92 Os06g0594100 BI306514 - Enoyl-CoA hydratase/isomerase domain containingprotein 3e-1 At4g33800 unknown protein O.I. H.G. S.X.
0.12 7.2 0.92 Os01g0574600 AK064876.1 - Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61) 4e-5 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) O.I. H.G. S.X.
0.07 3.7 0.86 Os03g0654400 AK066436.1 - Cationic amino acid transporter-like protein 4e-13 At5g36940 CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) O.I. H.G. S.X.
0.02 1.0 0.89 Os03g0823100 AK103844.1 - Sugar transporter-like protein 8e-26 At5g59250 sugar transporter family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
46.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0006826 The directed movement of iron (Fe) ions into, out of, within or between cells.
0.042 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage