Co-expression analysis

Gene ID Os02g0515600
Gene name
Homology with ArabidopsisSimilar to At5g13190: - (HF=3e-2)
Module size 6 genes
NF 0.20
%ile 18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.94Os02g0515600AK058947.1-LPS-induced tumor necrosis factor alpha factordomain containing protein3e-2At5g13190-O.I.H.G.S.X.
0.4660.90.95Os03g0210600AK070125.1-Hypothetical protein6e-4At2g30560glycine-rich proteinO.I.H.G.S.X.
0.2219.40.96Os06g0103500AK060849.1-Acyl-CoA oxidase (EC 1.3.3.6)1e-50At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2219.40.96Os09g0123300AK065517.1-Protein kinase domain containing protein3e-1At5g49770leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.138.20.95Os10g0533600AK111579.1-Mitogen-activated protein kinase homolog MMK2 (EC2.7.1.37)5e-36At4g01370ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)O.I.H.G.S.X.
0.094.90.94Os04g0665000AK062995.1-The start codon is not identified.4e-3At4g15790unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.597.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.097.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.396.7GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0006635A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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