CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0498800

Gene name
Homology with Arabidopsis Similar to At2g18550: HB-2 (HOMEOBOX-2) (HF=8e-1)

Module size 33 genes

NF 0.26

%ile 25.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.9 0.88 Os02g0498800 9630.m02821 - - 8e-1 At2g18550 HB-2 (HOMEOBOX-2) O.I. H.G. S.X.
0.41 52.4 0.91 Os01g0311400 NM_183695.1 - Zn-finger, RING domain containing protein 5e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.40 51.1 0.93 Os04g0495000 9632.m03982 - Galactose-binding like domain containing protein 4e-2 At1g80240 unknown protein O.I. H.G. S.X.
0.38 46.9 0.95 Os08g0151900 9636.m00489 - - 2e+0 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related O.I. H.G. S.X.
0.37 45.0 0.90 Os05g0232500 AK069430.1 - Ubiquitin-conjugating enzymes domain containingprotein 3e-4 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) O.I. H.G. S.X.
0.37 45.0 0.94 Os01g0171600 9629.m00699 - - 6e+0 At2g42000 plant EC metallothionein-like family 15 protein O.I. H.G. S.X.
0.36 44.0 0.92 Os04g0447500 AK064090.1 - NADPH-dependent codeinone reductase (EC 1.1.1.247) 7e-1 At1g59950 aldo/keto reductase, putative O.I. H.G. S.X.
0.33 38.8 0.95 Os10g0172300 9638.m00790 - - 2e+0 At4g30590 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.94 Os06g0656600 9635.m03964 - - 5e-9 At5g67590 FRO1 (FROSTBITE1) O.I. H.G. S.X.
0.32 36.3 0.93 Os10g0350400 NM_195939.1 - Ribosomal protein S12/S23 family protein 7e+0 At5g08060 unknown protein O.I. H.G. S.X.
0.32 36.3 0.93 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative O.I. H.G. S.X.
0.30 32.7 0.92 Os10g0447400 AK066983.1 - Conserved hypothetical protein 2e+0 At1g09500 cinnamyl-alcohol dehydrogenase family / CAD family O.I. H.G. S.X.
0.29 31.1 0.91 Os09g0360700 9637.m01662 - - 1e+0 At5g13825 unknown protein O.I. H.G. S.X.
0.28 31.1 0.93 Os05g0575800 AK069002.1 - Hypothetical protein 3e+0 At5g10130 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.28 31.1 0.94 Os03g0668000 AK111783.1 - Cyclin-like F-box domain containing protein 3e+0 At3g18530 binding O.I. H.G. S.X.
0.26 25.6 0.94 Os04g0489900 AK069310.1 - Hypothetical protein 7e-1 At1g24210 paired amphipathic helix repeat-containing protein O.I. H.G. S.X.
0.26 25.6 0.92 Os02g0107200 9630.m00074 - Diphosphomevalonate decarboxylase family protein 6e-14 At2g38700 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) O.I. H.G. S.X.
0.25 24.1 0.91 Os05g0409000 AK065999.1 - Ubiquitin-associated domain containing protein 9e-5 At2g26920 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.25 24.1 0.93 Os08g0483301 9636.m03789 - - 3e+0 At1g07090 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) O.I. H.G. S.X.
0.24 22.4 0.93 Os01g0934500 AK099792.1 - - 2e-3 At2g23580 MES4 (METHYL ESTERASE 4) O.I. H.G. S.X.
0.24 22.4 0.93 Os05g0105200 AK062492.1 - GTP-binding protein YPTM1 8e-44 At3g11730 ATFP8 O.I. H.G. S.X.
0.23 21.2 0.93 Os09g0420100 AK068795.1 - Zn-finger, cysteine-rich C6HC domain containingprotein 3e-1 At5g04410 NAC2 O.I. H.G. S.X.
0.22 19.4 0.95 Os08g0135800 AK100455.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 1e-4 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.21 17.9 0.95 Os01g0283500 AK064158.1 - Rhomboid-like protein family protein 9e-1 At5g03510 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.19 15.1 0.94 Os01g0945200 NM_189753.1 - Amino acid/polyamine transporter I family protein 5e-8 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.
0.18 13.7 0.93 Os09g0110866 9637.m00075 - - 2e+1 At5g09240 transcriptional coactivator p15 (PC4) family protein O.I. H.G. S.X.
0.17 12.6 0.93 Os03g0238000 AK108984.1 - Conserved hypothetical protein 6e-1 At3g06180 structural constituent of ribosome O.I. H.G. S.X.
0.17 12.6 0.95 Os03g0438900 AK111048.1 - Hypothetical protein 7e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) O.I. H.G. S.X.
0.16 11.3 0.93 Os04g0181000 9632.m00895 - - 3e-1 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.15 10.3 0.96 Os11g0152100 9639.m00460 - - 8e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.15 10.3 0.93 Os09g0322200 AK067539.1 - NUDIX hydrolase domain containing protein 8e-4 At5g19460 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) O.I. H.G. S.X.
0.13 8.2 0.93 Os01g0957900 AK068334.1 - ARM repeat fold domain containing protein 5e-1 At2g28050 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.11 6.5 0.91 Os11g0195800 AK061281.1 - Hypothetical protein 1e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	96.9	0.88	Os02g0498800	9630.m02821	-	-	8e-1	At2g18550	HB-2 (HOMEOBOX-2)	O.I.	H.G.	S.X.
0.41	52.4	0.91	Os01g0311400	NM_183695.1	-	Zn-finger, RING domain containing protein	5e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.40	51.1	0.93	Os04g0495000	9632.m03982	-	Galactose-binding like domain containing protein	4e-2	At1g80240	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os08g0151900	9636.m00489	-	-	2e+0	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	O.I.	H.G.	S.X.
0.37	45.0	0.90	Os05g0232500	AK069430.1	-	Ubiquitin-conjugating enzymes domain containingprotein	3e-4	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.
0.37	45.0	0.94	Os01g0171600	9629.m00699	-	-	6e+0	At2g42000	plant EC metallothionein-like family 15 protein	O.I.	H.G.	S.X.
0.36	44.0	0.92	Os04g0447500	AK064090.1	-	NADPH-dependent codeinone reductase (EC 1.1.1.247)	7e-1	At1g59950	aldo/keto reductase, putative	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os10g0172300	9638.m00790	-	-	2e+0	At4g30590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os06g0656600	9635.m03964	-	-	5e-9	At5g67590	FRO1 (FROSTBITE1)	O.I.	H.G.	S.X.
0.32	36.3	0.93	Os10g0350400	NM_195939.1	-	Ribosomal protein S12/S23 family protein	7e+0	At5g08060	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.93	Os08g0514000	9636.m04074	-	Legume lectin, beta domain containing protein	3e-1	At4g02420	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.30	32.7	0.92	Os10g0447400	AK066983.1	-	Conserved hypothetical protein	2e+0	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.
0.29	31.1	0.91	Os09g0360700	9637.m01662	-	-	1e+0	At5g13825	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.93	Os05g0575800	AK069002.1	-	Hypothetical protein	3e+0	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.28	31.1	0.94	Os03g0668000	AK111783.1	-	Cyclin-like F-box domain containing protein	3e+0	At3g18530	binding	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os04g0489900	AK069310.1	-	Hypothetical protein	7e-1	At1g24210	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.
0.26	25.6	0.92	Os02g0107200	9630.m00074	-	Diphosphomevalonate decarboxylase family protein	6e-14	At2g38700	MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)	O.I.	H.G.	S.X.
0.25	24.1	0.91	Os05g0409000	AK065999.1	-	Ubiquitin-associated domain containing protein	9e-5	At2g26920	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.93	Os08g0483301	9636.m03789	-	-	3e+0	At1g07090	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	O.I.	H.G.	S.X.
0.24	22.4	0.93	Os01g0934500	AK099792.1	-	-	2e-3	At2g23580	MES4 (METHYL ESTERASE 4)	O.I.	H.G.	S.X.
0.24	22.4	0.93	Os05g0105200	AK062492.1	-	GTP-binding protein YPTM1	8e-44	At3g11730	ATFP8	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os09g0420100	AK068795.1	-	Zn-finger, cysteine-rich C6HC domain containingprotein	3e-1	At5g04410	NAC2	O.I.	H.G.	S.X.
0.22	19.4	0.95	Os08g0135800	AK100455.1	-	Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein	1e-4	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os01g0283500	AK064158.1	-	Rhomboid-like protein family protein	9e-1	At5g03510	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.19	15.1	0.94	Os01g0945200	NM_189753.1	-	Amino acid/polyamine transporter I family protein	5e-8	At2g01170	BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)	O.I.	H.G.	S.X.
0.18	13.7	0.93	Os09g0110866	9637.m00075	-	-	2e+1	At5g09240	transcriptional coactivator p15 (PC4) family protein	O.I.	H.G.	S.X.
0.17	12.6	0.93	Os03g0238000	AK108984.1	-	Conserved hypothetical protein	6e-1	At3g06180	structural constituent of ribosome	O.I.	H.G.	S.X.
0.17	12.6	0.95	Os03g0438900	AK111048.1	-	Hypothetical protein	7e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.
0.16	11.3	0.93	Os04g0181000	9632.m00895	-	-	3e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.
0.15	10.3	0.96	Os11g0152100	9639.m00460	-	-	8e-1	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.
0.15	10.3	0.93	Os09g0322200	AK067539.1	-	NUDIX hydrolase domain containing protein	8e-4	At5g19460	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	O.I.	H.G.	S.X.
0.13	8.2	0.93	Os01g0957900	AK068334.1	-	ARM repeat fold domain containing protein	5e-1	At2g28050	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.11	6.5	0.91	Os11g0195800	AK061281.1	-	Hypothetical protein	1e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.8 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.2 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
22.8	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
21.2	99.2	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
13.9	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.8	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.6	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.057 1 GO:0007217 The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor.
0.057 1 GO:0007268 The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.
0.029 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.

SF	Genes	GO ID	Process Name
0.057	1	GO:0007217	The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor.
0.057	1	GO:0007268	The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.
0.029	1	GO:0016579	The removal of one or more ubiquitin moieties from a protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os02g0498800
Gene name
Homology with Arabidopsis	Similar to At2g18550: HB-2 (HOMEOBOX-2) (HF=8e-1)
Module size	33 genes
NF	0.26
%ile	25.5

Co-expression analysis

Gene ID Os02g0498800 Gene name Homology with ArabidopsisSimilar to At2g18550: HB-2 (HOMEOBOX-2) (HF=8e-1) Module size 33 genes NF 0.26 %ile 25.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0498800

Gene name
Homology with Arabidopsis Similar to At2g18550: HB-2 (HOMEOBOX-2) (HF=8e-1)

Module size 33 genes

NF 0.26

%ile 25.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays