CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0487200

Gene name
Homology with Arabidopsis Similar to At4g33740: unknown protein (HF=3e-1)

Module size 9 genes

NF 0.53

%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os02g0487200 9630.m02721 - - 3e-1 At4g33740 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os11g0560700 9639.m03187 - - 5e-1 At2g44690 ARAC9 O.I. H.G. S.X.
0.56 76.3 1.00 Os03g0653100 9631.m04352 - - 5e-1 At5g47970 nitrogen regulation family protein O.I. H.G. S.X.
0.50 68.0 0.99 Os10g0436100 9638.m02565 - - 5e-1 At2g35300 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein O.I. H.G. S.X.
0.50 68.0 1.00 Os11g0175000 AK109815.1 - Hypothetical protein 3e+0 At5g19050 unknown protein O.I. H.G. S.X.
0.47 62.3 0.99 Os01g0290300 9629.m01813 - BED finger domain containing protein 2e-2 At2g25680 MOT1 (molybdate transporter 1) O.I. H.G. S.X.
0.46 60.9 1.00 Os10g0325500 NM_195699.1 - - 1e-1 At1g32240 KAN2 (KANADI 2) O.I. H.G. S.X.
0.42 53.9 0.99 Os06g0313200 9634.m02029 - SAM dependent carboxyl methyltransferase familyprotein 9e+0 At5g01610 unknown protein O.I. H.G. S.X.
0.40 51.1 1.00 Os03g0359400 9631.m02386 - - 5e+0 At1g76840 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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