Co-expression analysis

Gene ID Os02g0453800
Gene name
Homology with ArabidopsisSimilar to At3g54170: ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) (HF=2e+0)
Module size 6 genes
NF 0.43
%ile 53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.96Os02g0453800AK069657.1-Hypothetical protein2e+0At3g54170ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)O.I.H.G.S.X.
0.5573.70.96Os03g0201300AK101497.1-Hypothetical protein3e-1At1g63320pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4051.10.96Os04g0643700AK108565.1-TPR-like domain containing protein9e-2At2g17440leucine-rich repeat family proteinO.I.H.G.S.X.
0.4051.10.96Os07g0300200CA762475-Protein prenyltransferase domain containingprotein2e+0At3g03620MATE efflux family proteinO.I.H.G.S.X.
0.3541.70.96Os07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.2016.50.96Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.397.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.997.0GSM159219Seed (S5, 21 - 29 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
5.897.0GSM159221Seed (S5, 21 - 29 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
5.596.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM159216Seed (S4, 11 - 20 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
5.396.7GSM240996Zhonghua11 7 DAF, biological replicate 3GSE9498Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stageLink to GEO
4.996.5GSM159218Seed (S4, 11 - 20 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
4.896.5GSM240995Zhonghua11 7 DAF, biological replicate 2GSE9498Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stageLink to GEO
4.796.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.Link to AmiGO
0.0571GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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