CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0328200

Gene name
Homology with Arabidopsis Similar to At4g36170: unknown protein (HF=3e-5)

Module size 8 genes

NF 0.58

%ile 79.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.98 Os02g0328200 AK064617.1 - Conserved hypothetical protein 3e-5 At4g36170 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os06g0564400 9634.m03503 - Cysteine synthase, chloroplast precursor (EC2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine(Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) 7e-1 At3g59760 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) O.I. H.G. S.X.
0.55 73.7 0.99 Os01g0820700 9629.m05948 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.55 73.7 0.99 Os04g0516800 AK105554.1 - Conserved hypothetical protein 2e-1 At5g02570 histone H2B, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os06g0165600 AY345235.1 - CRT/DRE binding factor (Transcription factorRCBF4) 2e-3 At5g65320 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.40 51.1 0.99 Os03g0675000 AK063092.1 - Conserved hypothetical protein 9e-1 At4g24240 WRKY7 O.I. H.G. S.X.
0.40 51.1 0.99 Os01g0268000 AK107975.1 - Hypothetical protein 2e+0 At3g21270 ADOF2 O.I. H.G. S.X.
0.33 38.8 0.99 Os03g0611800 9637.m02957 - - 4e+0 At3g46070 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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