CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0303100

Gene name
Homology with Arabidopsis Similar to At5g67450: AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) (HF=4e+0)

Module size 6 genes

NF 0.64

%ile 86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.96 Os02g0303100 9630.m01912 - - 4e+0 At5g67450 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) O.I. H.G. S.X.
0.67 87.2 0.97 Os12g0255800 9640.m01494 - - 5e+0 At5g10310 unknown protein O.I. H.G. S.X.
0.63 82.7 0.96 Os05g0212000 9633.m01079 - - 4e-2 At2g20613 unknown protein O.I. H.G. S.X.
0.60 79.7 0.97 Os10g0134600 9638.m00362 - - 1e+0 At1g55310 SR33 O.I. H.G. S.X.
0.60 79.7 0.97 Os09g0305900 9637.m01087 - - 4e-1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) O.I. H.G. S.X.
0.50 68.0 0.97 Os01g0204500 NM_188331.1 - - 3e-1 At1g72640 binding / catalytic O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.4 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.2 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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