Co-expression analysis

Gene ID Os02g0301800
Gene name
Homology with ArabidopsisSimilar to At5g20310: - (HF=5e-1)
Module size 12 genes
NF 0.45
%ile 57.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8194.80.96Os02g0301800AK067818.1-Disease resistance protein family protein5e-1At5g20310-O.I.H.G.S.X.
0.6281.50.96Os03g0616300AK102930.1-DNA-directed polymerase kappa2e-8At1g49980DNA-directed DNA polymerase/ damaged DNA bindingO.I.H.G.S.X.
0.5471.90.96Os01g0811300AK065227.1--2e+0At1g73100SUVH3 (SU(VAR)3-9 HOMOLOG 3)O.I.H.G.S.X.
0.4863.70.97Os08g0166500AK103907.1-Hypothetical protein5e-2At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.4863.70.97Os03g0849700AK111868.1-TPR-like domain containing protein1e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4762.30.97Os08g0520400AK064309.1-Conserved hypothetical protein2e+0At5g23940EMB3009 (embryo defective 3009)O.I.H.G.S.X.
0.4660.90.96Os03g0192800AK110648.1-Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein1e-5At3g49600UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26)O.I.H.G.S.X.
0.4253.90.97Os02g0301000AK063049.1-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein7e-8At1g01350nucleic acid binding / protein binding / zinc ion bindingO.I.H.G.S.X.
0.4152.40.96Os08g0484400AK065727.1-Bacterial Fmu (Sun)/eukaryotic nucleolarNOL1/Nop2p domain containing protein4e-10At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.3541.70.97Os07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.2931.10.97Os10g0135300AK072221.1-Cyclin-like F-box domain containing protein2e-2At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)O.I.H.G.S.X.
0.2219.40.96Os02g07808009630.m05348-Helicase, C-terminal domain containing protein3e-1At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.999.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.499.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.598.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0401GO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.Link to AmiGO
0.0141GO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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