CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0282700

Gene name
Homology with Arabidopsis Similar to At3g57950: unknown protein (HF=2e-3)

Module size 17 genes

NF 0.73

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.97 Os02g0282700 9630.m01710 - - 2e-3 At3g57950 unknown protein O.I. H.G. S.X.
0.91 98.9 0.97 Os04g0186700 9632.m00953 - - 3e+0 At4g05440 EDA35 (embryo sac development arrest 35) O.I. H.G. S.X.
0.85 96.1 0.98 Os07g0578400 9635.m03890 - - 1e+0 At4g32605 - O.I. H.G. S.X.
0.81 94.8 0.97 Os07g0672300 9635.m04790 - - 7e-1 At2g30460 - O.I. H.G. S.X.
0.81 94.8 0.97 Os03g0400500 9631.m02793 - - 4e-1 At1g20120 family II extracellular lipase, putative O.I. H.G. S.X.
0.79 93.6 0.98 Os04g0594500 AK106269.1 - Conserved hypothetical protein 3e+0 At5g52990 vesicle-associated membrane protein-related O.I. H.G. S.X.
0.78 93.4 0.97 Os07g0493500 9635.m03049 - - 1e+0 At4g14860 atofp11 (Arabidopsis thaliana ovate family protein 11) O.I. H.G. S.X.
0.71 89.6 0.97 Os05g0486400 9633.m03815 - - 6e-1 At5g63480 unknown protein O.I. H.G. S.X.
0.70 88.4 0.97 Os05g0385900 9633.m02934 - - 3e-1 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) O.I. H.G. S.X.
0.70 88.4 0.97 Os01g0579300 9629.m03788 - - 5e-1 At1g49930 - O.I. H.G. S.X.
0.68 87.5 0.97 Os01g0677100 AK108595.1 - Conserved hypothetical protein 3e+0 At3g25597 unknown protein O.I. H.G. S.X.
0.67 87.2 0.97 Os09g0285800 AK071578.1 - Conserved hypothetical protein 1e+0 At3g44140 unknown protein O.I. H.G. S.X.
0.65 83.8 0.97 Os01g0154200 9629.m00538 - - 4e-1 At3g54826 - O.I. H.G. S.X.
0.62 81.5 0.97 Os08g0499500 9636.m03939 - - 5e-1 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) O.I. H.G. S.X.
0.61 81.2 0.97 Os05g0250700 9633.m01443 - Disease resistance protein family protein 2e+0 At3g60520 unknown protein O.I. H.G. S.X.
0.59 78.0 0.98 Os09g0331050 9637.m01350 - - 1e+1 At3g48550 - O.I. H.G. S.X.
0.58 77.0 0.97 Os01g0765100 9629.m05473 - - 5e+0 At5g35760 beta-galactosidase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.8 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
11.1 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0006879 Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
0.071 1 GO:0006826 The directed movement of iron (Fe) ions into, out of, within or between cells.
0.014 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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