CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0280500

Gene name
Homology with Arabidopsis Similar to At1g67280: lactoylglutathione lyase, putative / glyoxalase I, putative (HF=1e-10)

Module size 6 genes

NF 0.39

%ile 47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os02g0280500 AK058486.1 - Glyoxalase I 1e-10 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.40 51.1 0.96 Os01g0102600 AK064812.1 - Shikimate kinase domain containing protein 6e-4 At1g35460 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.38 46.9 0.96 Os04g0639300 AK058483.1 - Conserved hypothetical protein 2e-5 At2g21960 unknown protein O.I. H.G. S.X.
0.32 36.3 0.95 Os12g0498500 9640.m03045 - Heat shock protein DnaJ, N-terminal domaincontaining protein 3e-5 At5g21430 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.95 Os01g0761000 CF335135 - Conserved hypothetical protein 6e+0 At5g58280 transcriptional factor B3 family protein O.I. H.G. S.X.
0.25 24.1 0.96 Os08g0379400 AK112013.1 - Quinone oxidoreductase-like protein 8e-4 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.3 98.3 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.4 97.2 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.6 96.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
5.3 96.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.2 96.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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