CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0279016

Gene name
Homology with Arabidopsis Similar to At3g57860: UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) (HF=2e+0)

Module size 11 genes

NF 0.31

%ile 32.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os02g0279016 BI803277 - - 2e+0 At3g57860 UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE) O.I. H.G. S.X.
0.47 62.3 0.92 Os01g0343800 NM_183963.1 - - 2e+0 At4g36925 unknown protein O.I. H.G. S.X.
0.40 51.1 0.90 Os01g0967400 NM_189417.1 - Conserved hypothetical protein 3e+0 At1g06510 unknown protein O.I. H.G. S.X.
0.39 48.3 0.92 Os05g0368100 9633.m02771 - - 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 0.93 Os04g0218300 9632.m01295 - - 1e-1 At2g24550 unknown protein O.I. H.G. S.X.
0.30 32.7 0.92 Os10g0368100 AK105198.1 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At1g17190 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) O.I. H.G. S.X.
0.28 31.1 0.93 Os01g0560500 NM_193511.1 - - 2e+0 At4g03113 unknown protein O.I. H.G. S.X.
0.23 21.2 0.92 Os03g0779400 9631.m05558 - - 2e+0 At5g41570 WRKY24 O.I. H.G. S.X.
0.22 19.4 0.92 Os07g0468500 AK073028.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At1g65560 allyl alcohol dehydrogenase, putative O.I. H.G. S.X.
0.18 13.7 0.92 Os05g0433400 9633.m03336 - Protein of unknown function DUF1218 family protein 3e-1 At4g21740 unknown protein O.I. H.G. S.X.
0.13 8.2 0.93 Os06g0194700 9634.m00896 - - 2e+0 At4g21213 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.3 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.3 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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