CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0268050

Gene name
Homology with Arabidopsis Similar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.31 34.5 0.99 Os02g0268050 9630.m01571 - - 1e-1 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) O.I. H.G. S.X.
0.80 94.6 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.
0.71 89.6 0.99 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.67 87.2 0.99 Os08g0275400 9636.m01744 - - 1e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0265400 9632.m01771 - - 9e+0 At1g32920 unknown protein O.I. H.G. S.X.
0.31 34.5 0.99 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os02g0268050	9630.m01571	-	-	1e-1	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	O.I.	H.G.	S.X.
0.80	94.6	0.99	Os05g0287100	9633.m01925	-	-	9e+0	At5g27541	-	O.I.	H.G.	S.X.
0.71	89.6	0.99	Os11g0138225	9639.m00338	-	-	1e+1	At5g16980	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os08g0275400	9636.m01744	-	-	1e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os04g0265400	9632.m01771	-	-	9e+0	At1g32920	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os03g0601400	9631.m03890	-	-	5e+0	At5g06470	glutaredoxin family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os09g0117301	9637.m00131	-	-	2e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os05g0558750	9633.m04529	-	-	8e+0	At3g19790	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os05g0175000	9633.m00739	-	-	3e+0	At4g22000	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os04g0192733	9632.m01032	-	-	3e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0818200	AK103555.1	-	TPR-like domain containing protein	2e+0	At1g18050	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0522800	CB627985	-	ARM repeat fold domain containing protein	2e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0367800	NM_193806.1	-	-	3e-1	At5g09310	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os09g0461601	9637.m02526	-	-	4e+0	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os01g0283400	AK119993.1	-	Conserved hypothetical protein	3e-1	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os07g0266100	9635.m01624	-	-	6e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os11g0162300	9639.m00559	-	Hypothetical protein	2e+0	At4g30996	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os03g0205300	9631.m00991	-	-	1e-10	At2g14760	basic helix-loop-helix protein / bHLH protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os03g0568700	9631.m03556	-	-	4e+0	At1g79780	-	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os01g0373200	9632.m03113	-	-	2e+0	At5g17360	-	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os07g0145600	NM_186298.1	-	-	3e-1	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os09g0551400	9637.m03224	-	-	2e-5	At4g23280	protein kinase, putative	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os05g0531800	9633.m04266	-	-	2e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os06g0642200	9634.m04198	-	-	2e-1	At4g13310	CYP71A20	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os10g0509600	9638.m03262	-	Conserved hypothetical protein	3e+0	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os10g0463600	NM_196898.1	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	1e+0	At4g08025	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os09g0271000	AK102955.1	-	Conserved hypothetical protein	2e+0	At5g55890	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os03g0391800	9640.m03376	-	-	5e-1	At3g56400	WRKY70	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os07g0630600	9635.m04381	-	-	2e+0	At3g49270	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os02g0198100	9630.m00965	-	-	2e+0	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os02g0821100	AK110928.1	-	Conserved hypothetical protein	2e+1	At5g22390	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os10g0213900	9638.m01323	-	-	1e+0	At2g35765	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os03g0592900	9631.m03808	-	-	5e+0	At2g05786	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os07g0249566	NM_186844.1	-	-	1e+0	At2g24970	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os04g0404000	AK107819.1	-	Hypothetical protein	4e+0	At2g16020	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os01g0789000	9629.m05678	-	Cyclin-like F-box domain containing protein	2e-1	At3g25890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os02g0180900	AK064416.1	-	Hypothetical protein	6e-2	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os01g0339600	AK106772.1	-	Conserved hypothetical protein	2e-2	At2g21780	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os02g0640600	9630.m04103	-	-	2e+0	At5g54070	AT-HSFA9	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os01g0957400	NM_189328.1	-	-	2e+0	At3g52520	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os09g0244600	AK108228.1	-	Conserved hypothetical protein	4e-1	At5g61410	RPE	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os01g0161900	AU222516	-	Leucine-rich repeat, plant specific containingprotein	3e+0	At3g31415	terpene synthase/cyclase family protein	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os01g0108700	AK111316.1	-	Hypothetical protein	5e+0	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os07g0667500	9635.m04750	-	-	2e+0	At2g35710	glycogenin glucosyltransferase (glycogenin)-related	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os05g0596900	9633.m04896	-	-	3e+0	At4g10130	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os12g0431066	9640.m02316	-	-	2e+0	At4g17960	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os11g0294200	9639.m01755	-	-	6e-1	At1g73830	BEE3 (BR ENHANCED EXPRESSION 3)	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os08g0486500	AK111410.1	-	Conserved hypothetical protein	3e+0	At1g18760	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os01g0612300	NM_192756.1	-	-	1e+0	At3g49601	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.4 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.7 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.5 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
26.4	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.7	99.4	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.5	99.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9	99.2	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5	99.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2	99.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6	99.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5	99.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6	99.0	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9	98.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os02g0268050
Gene name
Homology with Arabidopsis	Similar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	74.8

Co-expression analysis

Gene ID Os02g0268050 Gene name Homology with ArabidopsisSimilar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1) Module size 6 genes NF 0.55 %ile 74.8

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0268050

Gene name
Homology with Arabidopsis Similar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays