CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0268050

Gene name
Homology with Arabidopsis Similar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1)

Module size 6 genes

NF 0.55

%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.31 34.5 0.99 Os02g0268050 9630.m01571 - - 1e-1 At2g40610 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) O.I. H.G. S.X.
0.80 94.6 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.
0.71 89.6 0.99 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.67 87.2 0.99 Os08g0275400 9636.m01744 - - 1e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0265400 9632.m01771 - - 9e+0 At1g32920 unknown protein O.I. H.G. S.X.
0.31 34.5 0.99 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.4 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.7 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.5 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202325.1.S1_at, orthologous to the query gene, Os02g0268050

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.45 72.3 PtpAffx.202325.1.S1_at At2g40610 hypothetical protein - 6e-15 At4g01630 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) O.I. H.G. S.X.
0.53 80.5 PtpAffx.209217.1.S1_at At2g40610 NAC domain protein, IPR003441 - 3e-30 At1g79580 SMB (SOMBRERO) O.I. H.G. S.X.
0.52 79.4 PtpAffx.207798.1.S1_at At2g40610 AP2 domain-containing transcription factor - 4e-77 At5g17430 BBM (BABY BOOM) O.I. H.G. S.X.
0.49 75.7 Ptp.3890.1.S1_at At2g40610 - - 1e-7 At4g24340 phosphorylase family protein O.I. H.G. S.X.
0.48 75.4 PtpAffx.207798.1.S1_x_at At2g40610 AP2 domain-containing transcription factor - 4e-77 At5g17430 BBM (BABY BOOM) O.I. H.G. S.X.
0.47 74.6 PtpAffx.57723.1.S1_s_at At2g40610 caffeic acid 3-O-methyltransferase - 2e-39 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.45 72.3 PtpAffx.224693.1.S1_s_at At2g40610 hypothetical protein - 5e-4 At5g15180 peroxidase, putative O.I. H.G. S.X.
0.41 67.7 Ptp.6999.1.S1_at At2g40610 - - 7e+0 At4g30662 unknown protein O.I. H.G. S.X.
0.40 67.0 Ptp.3978.1.S1_at At2g40610 - - 3e-12 At2g37130 peroxidase 21 (PER21) (P21) (PRXR5) O.I. H.G. S.X.
0.40 67.0 PtpAffx.225742.1.S1_s_at At2g40610 hypothetical protein - 7e-5 At1g16260 protein kinase family protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.37311.1.A1_at At2g40610 hypothetical protein - 3e-11 At5g44380 FAD-binding domain-containing protein O.I. H.G. S.X.
0.30 52.0 PtpAffx.203108.1.S1_s_at At2g40610 hypothetical protein /// nbs-lrr resistance protein - 2e-1 At2g02410 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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