Co-expression analysis

Gene ID	Os02g0268050
Gene name
Homology with Arabidopsis	Similar to At2g40610: ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (HF=1e-1)
Module size	6 genes
NF	0.55
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.31	34.5	0.99	Os02g0268050	9630.m01571	-	-	1e-1	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.99	Os05g0287100	9633.m01925	-	-	9e+0	At5g27541	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.99	Os11g0138225	9639.m00338	-	-	1e+1	At5g16980	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.99	Os08g0275400	9636.m01744	-	-	1e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.99	Os04g0265400	9632.m01771	-	-	9e+0	At1g32920	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	0.99	Os03g0601400	9631.m03890	-	-	5e+0	At5g06470	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.4	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.7	99.4	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.5	99.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9	99.2	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5	99.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2	99.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6	99.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5	99.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6	99.0	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9	98.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig3674_at, orthologous to the query gene, Os02g0268050

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	Contig3674_at	At2g40610	-	-	1e-14	At2g37640	EXP3	O.I.	H.G.	S.X.	Please select
0.95	99.2	Contig1995_s_at	At2g40610	-	-	3e-24	At3g04500	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.94	98.9	Contig13350_at	At2g40610	-	-	6e-1	At1g33220	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	Contig6861_at	At2g40610	-	-	1e-3	At4g39680	SAP domain-containing protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	AF069331_s_at	At2g40610	low temperature induced protein	-	2e+1	At5g17523	-	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig3431_x_at	At2g40610	-	-	5e+0	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	Contig3429_at	At2g40610	-	-	7e-2	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.89	95.4	Contig6754_at	At2g40610	-	-	9e-13	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.88	95.2	HVSMEc0002F03f_at	At2g40610	-	-	2e+0	At1g69526	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	Contig17176_at	At2g40610	-	-	4e-4	At1g80860	PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.85	94.5	Contig10151_s_at	At2g40610	-	-	2e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig10152_at	At2g40610	-	-	2e-1	At3g25290	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig3432_s_at	At2g40610	-	-	3e-2	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.78	91.2	Contig26252_at	At2g40610	-	-	1e+0	At4g19680	IRT2	O.I.	H.G.	S.X.	Please select
0.77	90.8	HVSMEc0015H24f_at	At2g40610	-	-	1e-86	Atcg00430	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig3439_s_at	At2g40610	-	-	4e+0	At3g60180	uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	HVSMEc0002B05f2_s_at	At2g40610	-	-	3e-1	At2g39795	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig4309_at	At2g40610	-	-	7e+0	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig3435_at	At2g40610	-	-	6e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage