CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0256100

Gene name
Homology with Arabidopsis Similar to At4g23820: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (HF=1e-24)

Module size 6 genes

NF 0.33

%ile 36.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.90 Os02g0256100 AK059595.1 - Glycoside hydrolase, family 28 protein 1e-24 At4g23820 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.67 87.2 0.90 Os07g0658600 CK738634 - Radc1 1e-8 At5g07030 aspartic-type endopeptidase O.I. H.G. S.X.
0.38 46.9 0.90 Os03g0134900 AK102889.1 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) O.I. H.G. S.X.
0.37 45.0 0.90 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) O.I. H.G. S.X.
0.27 27.5 0.90 Os06g0217900 AK103765.1 - Cyclin, C-terminal domain containing protein 8e-1 At4g14520 DNA-directed RNA polymerase II-related O.I. H.G. S.X.
0.17 12.6 0.89 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.2 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1621724_at, orthologous to the query gene, Os02g0256100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1621724_at At4g23820 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 72.7 1617032_s_at At4g23820 lipid transfer protein /// lipid transfer protein - 9e-1 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.33 45.7 1609281_s_at At4g23820 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.29 37.7 1620454_s_at At4g23820 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.05 6.0 1612817_at At4g23820 hypothetical protein LOC100267132 - 3e-1 At3g62330 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.03 4.2 1612273_at At4g23820 - - 3e-47 At2g34420 LHB1B2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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