CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0255400

Gene name
Homology with Arabidopsis Similar to At2g39480: PGP6 (P-GLYCOPROTEIN 6) (HF=1e-3)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.99 Os02g0255400 NM_196472.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 1e-3 At2g39480 PGP6 (P-GLYCOPROTEIN 6) O.I. H.G. S.X.
0.80 94.6 0.99 Os07g0226700 9635.m01218 - - 1e+0 At3g15750 unknown protein O.I. H.G. S.X.
0.80 94.6 0.99 Os01g0758800 AU082216 - Conserved hypothetical protein 1e+0 At3g26420 ATRZ-1A O.I. H.G. S.X.
0.73 91.1 0.99 Os01g0843250 9629.m06177 - - 1e+0 At1g01780 LIM domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.99 Os05g0558750 9633.m04529 - - 8e+0 At3g19790 unknown protein O.I. H.G. S.X.
0.29 31.1 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.6 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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