CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0253700

Gene name
Homology with Arabidopsis Similar to At3g57950: unknown protein (HF=2e+0)

Module size 26 genes

NF 0.38

%ile 45.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.7 0.95 Os02g0253700 AK072542.1 - Conserved hypothetical protein 2e+0 At3g57950 unknown protein O.I. H.G. S.X.
0.58 77.0 0.98 Os11g0125100 9639.m00225 - - 1e-2 At5g42780 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) O.I. H.G. S.X.
0.58 77.0 0.98 Os02g0110100 9630.m00098 - - 5e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) O.I. H.G. S.X.
0.52 69.6 0.97 Os02g0294900 9630.m01835 - - 1e+0 At4g37830 cytochrome c oxidase-related O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0560000 AK067185.1 - Hypothetical protein 2e+0 At4g22850 - O.I. H.G. S.X.
0.47 62.3 0.98 Os06g0325700 AK111131.1 - Conserved hypothetical protein 3e+0 At1g25470 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.46 60.9 0.97 Os06g0483000 9634.m02754 - - 6e+0 At4g14315 unknown protein O.I. H.G. S.X.
0.46 60.9 0.98 Os04g0640100 9632.m05320 - - 5e+0 At5g50200 WR3 (WOUND-RESPONSIVE 3) O.I. H.G. S.X.
0.45 58.8 0.98 Os01g0192400 NM_189681.1 - - 1e+0 At4g18335 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os11g0286401 9639.m01688 - - 2e-1 At1g23060 unknown protein O.I. H.G. S.X.
0.43 55.4 0.97 Os11g0142150 9639.m00375 - - 2e+0 At2g30695 - O.I. H.G. S.X.
0.39 48.3 0.98 Os04g0158500 9632.m00674 - - 5e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.39 48.3 0.98 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding O.I. H.G. S.X.
0.38 46.9 0.97 Os03g0686050 9631.m04683 - - 3e-1 At2g22170 lipid-associated family protein O.I. H.G. S.X.
0.37 45.0 0.97 Os02g0826000 9630.m05783 - Cyclin-like F-box domain containing protein 1e+0 At1g76800 nodulin, putative O.I. H.G. S.X.
0.37 45.0 0.97 Os09g0346300 9637.m01513 - - 8e-1 At3g45180 ubiquitin family protein O.I. H.G. S.X.
0.31 34.5 0.97 Os01g0114800 AK070789.1 - - 4e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.31 34.5 0.97 Os08g0188300 9636.m00841 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.31 34.5 0.98 Os01g0132100 NM_184252.1 - Leucine-rich repeat, plant specific containingprotein 5e+0 At1g71780 unknown protein O.I. H.G. S.X.
0.30 32.7 0.97 Os10g0506000 9638.m03217 - TPR-like domain containing protein 1e-8 At1g55630 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.30 32.7 0.98 Os10g0176066 9638.m00847 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.29 31.1 0.97 Os01g0841800 AK111196.1 - Ribonuclease II domain containing protein 1e-15 At5g02250 EMB2730 (EMBRYO DEFECTIVE 2730) O.I. H.G. S.X.
0.28 31.1 0.97 Os10g0479800 AK107572.1 - Protein of unknown function DUF1336 domaincontaining protein 6e-25 At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.97 Os10g0436700 NM_196664.1 - - 1e-1 At3g01390 VMA10 (VACUOLAR MEMBRANE ATPASE 10) O.I. H.G. S.X.
0.22 19.4 0.97 Os05g0236600 9633.m01287 - - 6e-2 At4g19090 unknown protein O.I. H.G. S.X.
0.19 15.1 0.97 Os01g0713900 AK101864.1 - Myosin II heavy chain, non muscle 1e-51 At1g17580 MYA1 (MYOSIN 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.7	0.95	Os02g0253700	AK072542.1	-	Conserved hypothetical protein	2e+0	At3g57950	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os11g0125100	9639.m00225	-	-	1e-2	At5g42780	AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os02g0110100	9630.m00098	-	-	5e-1	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.52	69.6	0.97	Os02g0294900	9630.m01835	-	-	1e+0	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os03g0560000	AK067185.1	-	Hypothetical protein	2e+0	At4g22850	-	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os06g0325700	AK111131.1	-	Conserved hypothetical protein	3e+0	At1g25470	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os06g0483000	9634.m02754	-	-	6e+0	At4g14315	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os04g0640100	9632.m05320	-	-	5e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.
0.45	58.8	0.98	Os01g0192400	NM_189681.1	-	-	1e+0	At4g18335	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os11g0286401	9639.m01688	-	-	2e-1	At1g23060	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.97	Os11g0142150	9639.m00375	-	-	2e+0	At2g30695	-	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os04g0158500	9632.m00674	-	-	5e-1	At2g37580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os01g0848000	NM_190602.1	-	-	4e+0	At3g02860	zinc ion binding	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os03g0686050	9631.m04683	-	-	3e-1	At2g22170	lipid-associated family protein	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os02g0826000	9630.m05783	-	Cyclin-like F-box domain containing protein	1e+0	At1g76800	nodulin, putative	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os09g0346300	9637.m01513	-	-	8e-1	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os01g0114800	AK070789.1	-	-	4e-1	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os08g0188300	9636.m00841	-	-	1e+0	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os01g0132100	NM_184252.1	-	Leucine-rich repeat, plant specific containingprotein	5e+0	At1g71780	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.97	Os10g0506000	9638.m03217	-	TPR-like domain containing protein	1e-8	At1g55630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os10g0176066	9638.m00847	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os01g0841800	AK111196.1	-	Ribonuclease II domain containing protein	1e-15	At5g02250	EMB2730 (EMBRYO DEFECTIVE 2730)	O.I.	H.G.	S.X.
0.28	31.1	0.97	Os10g0479800	AK107572.1	-	Protein of unknown function DUF1336 domaincontaining protein	6e-25	At2g28320	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os10g0436700	NM_196664.1	-	-	1e-1	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	O.I.	H.G.	S.X.
0.22	19.4	0.97	Os05g0236600	9633.m01287	-	-	6e-2	At4g19090	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.97	Os01g0713900	AK101864.1	-	Myosin II heavy chain, non muscle	1e-51	At1g17580	MYA1 (MYOSIN 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.8 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.9 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
16.8	98.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.9	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.036 1 GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
0.017 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.
0.017 1 GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

SF	Genes	GO ID	Process Name
0.036	1	GO:0015986	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
0.017	1	GO:0006278	The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.
0.017	1	GO:0006310	Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0253700
Gene name
Homology with Arabidopsis	Similar to At3g57950: unknown protein (HF=2e+0)
Module size	26 genes
NF	0.38
%ile	45.6

Co-expression analysis

Gene ID Os02g0253700 Gene name Homology with ArabidopsisSimilar to At3g57950: unknown protein (HF=2e+0) Module size 26 genes NF 0.38 %ile 45.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0253700

Gene name
Homology with Arabidopsis Similar to At3g57950: unknown protein (HF=2e+0)

Module size 26 genes

NF 0.38

%ile 45.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays