Co-expression analysis

Gene ID Os02g0252200
Gene name
Homology with ArabidopsisSimilar to At1g79580: SMB (SOMBRERO) (HF=9e-10)
Module size 11 genes
NF 0.42
%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5777.00.87Os02g0252200AK063943.1-No apical meristem (NAM) protein domain containingprotein9e-10At1g79580SMB (SOMBRERO)O.I.H.G.S.X.
0.5676.30.90Os01g0248000AK073588.1-Stigma-specific protein Stig1 family protein5e-1At1g67035unknown proteinO.I.H.G.S.X.
0.5676.30.93Os12g0640700AK108649.1-N/apple PAN domain containing protein8e-1At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.5371.30.91Os01g0653200AK110920.1-Glycosyl transferase, group 1 domain containingprotein9e-1At1g71910unknown proteinO.I.H.G.S.X.
0.5068.00.91Os02g04480009630.m02338-Protein of unknown function DUF296 domaincontaining protein8e-6At4g22810DNA-binding protein-relatedO.I.H.G.S.X.
0.4152.40.90Os06g0294200AK119403.1-Hypothetical protein4e-1At4g34600unknown proteinO.I.H.G.S.X.
0.4152.40.90Os07g01044009635.m00042-Haem peroxidase, plant/fungal/bacterial familyprotein2e-3At5g40150peroxidase, putativeO.I.H.G.S.X.
0.3948.30.90Os02g0767400AK072314.1-Curculin-like (mannose-binding) lectin domaincontaining protein4e-7At5g35370ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.3338.80.91Os06g0543200AK073606.1-CDPK substrate protein 15e-15At2g38300DNA binding / transcription factorO.I.H.G.S.X.
0.2625.60.89Os02g07863009630.m05407-Typical P-type R2R3 Myb protein (Fragment)2e-17At4g37780MYB87 (MYB DOMAIN PROTEIN 87)O.I.H.G.S.X.
0.1813.70.92Os03g0858600AK102241.1-Protein of unknown function DUF668 family protein9e-1At5g24660LSU2 (RESPONSE TO LOW SULFUR 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.999.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.999.0GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.698.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.398.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.298.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.198.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.598.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.298.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.598.7GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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