Co-expression analysis

Gene ID Os02g0251900
Gene name
Homology with ArabidopsisSimilar to At3g10830: unknown protein (HF=4e-1)
Module size 6 genes
NF 0.04
%ile 2.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6181.20.75Os02g0251900AK109286.1-VQ domain containing protein4e-1At3g10830unknown proteinO.I.H.G.S.X.
0.2219.40.74Os02g0539200AK108494.1-U box domain containing protein9e-4At2g48120PAC (PALE CRESS)O.I.H.G.S.X.
0.1712.60.83Os01g0127700AK072972.1-Protein kinase domain containing protein1e-1At1g09176unknown proteinO.I.H.G.S.X.
0.138.20.83Os04g0571600AK109680.1-Multi antimicrobial extrusion protein MatE familyprotein1e+1Atcg00640-O.I.H.G.S.X.
0.116.50.77Os05g0530400AY344492.1-Heat shock factor protein 1 (HSF 1) (Heat shocktranscription factor 1) (HSTF 1)1e-9At5g03720AT-HSFA3O.I.H.G.S.X.
0.010.50.78Os11g0629600AK105472.1-BTB/POZ domain containing protein2e+0At5g60620phospholipid/glycerol acyltransferase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.6GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
4.496.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.396.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM275408Bala root tip_At the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
3.895.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.795.6GSM159183Y Leaf, biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
3.495.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.495.2GSM302921root_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1821GO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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