CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0232000

Gene name
Homology with Arabidopsis Similar to At3g02990: ATHSFA1E (HF=7e-4)

Module size 12 genes

NF 0.39

%ile 46.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.78 Os02g0232000 AK106488.1 - Heat shock transcription factor 29 (Fragment) 7e-4 At3g02990 ATHSFA1E O.I. H.G. S.X.
0.54 71.9 0.84 Os03g0650900 AK103022.1 - SPX, N-terminal domain containing protein 3e-6 At2g38920 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related O.I. H.G. S.X.
0.48 63.7 0.87 Os02g0551600 AK063102.1 - Conserved hypothetical protein 2e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.47 62.3 0.82 Os04g0462400 9632.m03670 - Lysine and histidine specific transporter 1e-5 At1g25530 lysine and histidine specific transporter, putative O.I. H.G. S.X.
0.46 60.9 0.88 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 O.I. H.G. S.X.
0.44 58.1 0.87 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.40 51.1 0.89 Os01g0183600 AK110852.1 - Cytochrome P450 family protein 2e-1 At2g21910 CYP96A5 O.I. H.G. S.X.
0.36 44.0 0.88 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.35 41.7 0.87 Os04g0610900 AK120898.1 - EDR1 9e-5 At4g24480 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.35 41.7 0.88 Os10g0521500 AK105796.1 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.26 25.6 0.87 Os12g0145400 AK063322.1 - Protein of unknown function DUF231 domaincontaining protein 2e-8 At5g19160 unknown protein O.I. H.G. S.X.
0.14 9.3 0.83 Os03g0747900 AY374515.1 - Myosin heavy chain class XI E1 protein 2e-93 At2g31900 XIF O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0006779 The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
0.037 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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