CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0222100

Gene name
Homology with Arabidopsis Similar to At3g04940: CYSD1 (CYSTEINE SYNTHASE D1) (HF=1e+0)

Module size 7 genes

NF 0.07

%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 41.7 0.85 Os02g0222100 AK110984.1 - Cysteine synthase (EC 4.2.99.8) 1e+0 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) O.I. H.G. S.X.
0.50 68.0 0.89 Os07g0493800 9635.m03053 - Protein kinase domain containing protein 3e-4 At4g13190 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.44 58.1 0.91 Os01g0816600 NM_191078.1 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase O.I. H.G. S.X.
0.25 24.1 0.91 Os01g0810500 NM_191035.1 - Protein kinase domain containing protein 2e-5 At1g61860 protein kinase, putative O.I. H.G. S.X.
0.08 4.2 0.90 Os02g0515200 AK108843.1 - Conserved hypothetical protein 6e-1 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) O.I. H.G. S.X.
0.06 3.0 0.88 Os05g0186900 AK111403.1 - Conserved hypothetical protein 7e-1 At1g04250 AXR3 (AUXIN RESISTANT 3) O.I. H.G. S.X.
0.01 0.5 0.88 Os07g0570500 CB663734 - Peptidase M16, C-terminal domain containingprotein 7e-10 Atcg00280 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.3 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage