CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0207400

Gene name
Homology with Arabidopsis Similar to At4g34135: UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2) (HF=2e-1)

Module size 13 genes

NF 0.55

%ile 74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.89 Os02g0207400 9630.m01045 - - 2e-1 At4g34135 UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2) O.I. H.G. S.X.
0.71 89.6 0.92 Os01g0823600 CF305219 - Conserved hypothetical protein 1e+0 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.92 Os01g0700100 AK059965.1 - MtN3 and saliva related transmembrane proteinfamily protein 4e-2 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) O.I. H.G. S.X.
0.61 81.2 0.90 Os07g0425000 AK108531.1 - Conserved hypothetical protein 6e-1 At3g28740 CYP81D1 O.I. H.G. S.X.
0.61 81.2 0.94 Os03g0228200 9631.m01196 - Conserved hypothetical protein 2e-2 At2g23790 unknown protein O.I. H.G. S.X.
0.59 78.0 0.88 Os01g0175700 CB624018 - HCO3-transporter domain containing protein 2e-5 At1g15460 BOR4 (REQUIRES HIGH BORON 4) O.I. H.G. S.X.
0.57 77.0 0.92 Os08g0139700 CB617889 - Terpene synthase-like domain containing protein 2e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.52 69.6 0.90 Os12g0226900 AK060453.1 - Allyl alcohol dehydrogenase 7e-7 At5g16970 AT-AER (alkenal reductase) O.I. H.G. S.X.
0.52 69.6 0.92 Os09g0553900 AK099586.1 - - 2e+0 At5g59040 COPT3 O.I. H.G. S.X.
0.48 63.7 0.96 Os05g0582300 AK101790.1 - Solanesyl diphosphate synthase 2e-17 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.44 58.1 0.94 Os02g0705100 AK063491.1 - Epoxide hydrolase family protein 2e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.35 41.7 0.93 Os01g0666600 CF325024 - Conserved hypothetical protein 5e+0 At3g58380 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.93 Os12g0626400 AK063967.1 - Squalene/phytoene synthase family protein 7e-10 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.0 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.051 1 GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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