CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0207100

Gene name
Homology with Arabidopsis Similar to At2g11005: glycine-rich protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os02g0207100 AK119766.1 - BCH1 1e+0 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.60 79.7 0.99 Os10g0153800 NM_194912.1 - - 2e-1 At2g02440 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os01g0889101 NM_190210.1 - - 1e-3 At3g17160 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os11g0215200 9639.m01036 - - 5e-2 At4g19270 unknown protein O.I. H.G. S.X.
0.38 46.9 0.98 Os06g0110600 NM_185383.1 - - 4e-1 At5g38300 unknown protein O.I. H.G. S.X.
0.17 12.6 0.99 Os10g0392050 9638.m02132 - - 4e+0 At3g22110 PAC1 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.98	Os02g0207100	AK119766.1	-	BCH1	1e+0	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.
0.60	79.7	0.99	Os10g0153800	NM_194912.1	-	-	2e-1	At2g02440	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os01g0889101	NM_190210.1	-	-	1e-3	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os11g0215200	9639.m01036	-	-	5e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os06g0110600	NM_185383.1	-	-	4e-1	At5g38300	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	0.99	Os10g0392050	9638.m02132	-	-	4e+0	At3g22110	PAC1	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os11g0643200	9639.m03905	-	-	1e+1	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os12g0195050	9640.m00869	-	-	4e+0	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	O.I.	H.G.	S.X.
0.55	73.7	0.97	Os01g0312400	9629.m02004	-	-	8e-1	At2g43760	molybdopterin biosynthesis MoaE family protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os06g0148100	9634.m00477	-	-	1e+0	At4g33660	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os11g0485100	9639.m02666	-	-	4e+0	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os06g0484400	AK106712.1	-	Hypothetical protein	6e-2	At1g31310	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os05g0480500	AK062331.1	-	Hypothetical protein	1e+0	At5g45860	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os07g0664900	XM_354050.1	-	-	1e+0	At5g38980	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os01g0246300	9629.m01417	-	Conserved hypothetical protein	6e-1	At5g10450	GRF6 (G-box regulating factor 6)	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os07g0590550	9635.m04005	-	-	2e+0	At5g48820	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os02g0503600	9630.m02875	-	-	2e+0	At1g11700	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os06g0542100	AK111086.1	-	Hypothetical protein	1e+0	At5g42330	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os04g0268200	9632.m01809	-	-	7e-2	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os02g0192000	9630.m00904	-	-	7e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	O.I.	H.G.	S.X.
0.38	46.9	0.96	Os02g0646600	9630.m04153	-	-	4e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os03g0264600	CB637762	-	Zn-finger, C2H2 type domain containing protein	4e-2	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os07g0145000	9640.m02347	-	-	3e+0	At2g46840	-	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os08g0327800	9636.m02336	-	-	2e-1	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os09g0449000	9637.m02424	-	Zn-finger-like, PHD finger domain containingprotein	1e+0	At2g44730	transcription factor	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os12g0159850	9632.m01090	-	-	4e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os04g0593200	9632.m04890	-	Myb, DNA-binding domain containing protein	5e-7	At4g22680	MYB85 (myb domain protein 85)	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os03g0141900	9631.m00401	-	Hypothetical protein	6e-1	At4g36660	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os01g0627266	9629.m04209	-	-	5e+0	At3g21352	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os06g0346701	9634.m02348	-	-	5e+0	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os08g0172100	9636.m00691	-	-	9e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os09g0526300	AB101649.1	-	OCL3 protein	9e-13	At4g00730	ANL2 (ANTHOCYANINLESS 2)	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os01g0223300	AK107015.1	-	Conserved hypothetical protein	3e-1	At1g26250	proline-rich extensin, putative	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os11g0176500	9639.m00691	-	-	5e-1	At1g26945	KDR (KIDARI)	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os03g0291700	AK107416.1	-	Hypothetical protein	1e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os02g0491300	9630.m02763	-	Conserved hypothetical protein	1e-3	At3g63095	-	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os04g0162600	AK105473.1	-	Conserved hypothetical protein	3e+0	At5g58800	quinone reductase family protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os08g0522000	9636.m04165	-	-	3e+0	At5g66220	chalcone isomerase	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os12g0273200	9640.m01710	-	-	6e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os01g0942100	NM_189724.1	-	-	7e+0	At2g18160	ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2)	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os12g0108300	9640.m00075	-	-	9e+0	At4g11485	LCR11 (Low-molecular-weight cysteine-rich 11)	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os01g0193800	NM_188212.1	-	-	7e-1	At4g18400	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os10g0131000	NM_194724.1	-	Disease resistance protein family protein	4e-1	At3g26125	CYP86C2	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os09g0256301	9637.m00592	-	-	2e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os01g0340400	9629.m02294	-	-	9e-1	At1g48770	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.97	Os01g0499500	9630.m00867	-	-	2e+0	At1g25425	CLE43 (CLAVATA3/ESR-RELATED 43)	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os01g0873200	AK109463.1	-	Conserved hypothetical protein	4e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os04g0292450	9632.m02085	-	-	6e+0	At5g10780	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.9	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0207100
Gene name
Homology with Arabidopsis	Similar to At2g11005: glycine-rich protein (HF=1e+0)
Module size	6 genes
NF	0.50
%ile	66.5

Co-expression analysis

Gene ID Os02g0207100 Gene name Homology with ArabidopsisSimilar to At2g11005: glycine-rich protein (HF=1e+0) Module size 6 genes NF 0.50 %ile 66.5

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0207100

Gene name
Homology with Arabidopsis Similar to At2g11005: glycine-rich protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 66.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays