CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0207100

Gene name
Homology with Arabidopsis Similar to At2g11005: glycine-rich protein (HF=1e+0)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os02g0207100 AK119766.1 - BCH1 1e+0 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.60 79.7 0.99 Os10g0153800 NM_194912.1 - - 2e-1 At2g02440 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os01g0889101 NM_190210.1 - - 1e-3 At3g17160 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os11g0215200 9639.m01036 - - 5e-2 At4g19270 unknown protein O.I. H.G. S.X.
0.38 46.9 0.98 Os06g0110600 NM_185383.1 - - 4e-1 At5g38300 unknown protein O.I. H.G. S.X.
0.17 12.6 0.99 Os10g0392050 9638.m02132 - - 4e+0 At3g22110 PAC1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.12159.1.S1_at, orthologous to the query gene, Os02g0207100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.39 56.1 TaAffx.12159.1.S1_at At2g11005 - - 8e-2 At5g17050 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) O.I. H.G. S.X.
0.73 89.1 Ta.5346.1.A1_at At2g11005 - - 1e+0 At1g54200 unknown protein O.I. H.G. S.X.
0.73 89.1 Ta.5346.2.S1_x_at At2g11005 - - 1e-1 At1g28650 lipase, putative O.I. H.G. S.X.
0.44 64.5 Ta.23376.1.S1_at At2g11005 - - 1e-2 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) O.I. H.G. S.X.
0.43 62.2 Ta.5346.3.A1_x_at At2g11005 - - 9e-2 At1g28650 lipase, putative O.I. H.G. S.X.
0.40 58.4 Ta.23376.2.S1_s_at At2g11005 - - 1e+0 At5g24490 30S ribosomal protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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