CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0206100

Gene name
Homology with Arabidopsis Similar to At3g60550: CYCP3 (HF=4e+0)

Module size 11 genes

NF 0.41

%ile 49.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.89 Os02g0206100 AK066593.1 - The start codon is not identified. 4e+0 At3g60550 CYCP3 O.I. H.G. S.X.
0.61 81.2 0.92 Os02g0726600 AK064213.1 - Conserved hypothetical protein 5e+0 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.57 77.0 0.92 Os07g0476900 AK066045.1 - Thioredoxin-related domain containing protein 1e-1 At1g76080 CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) O.I. H.G. S.X.
0.56 76.3 0.92 Os11g0130200 AK059458.1 - Protein of unknown function DUF309 domaincontaining protein 8e-3 At2g28790 osmotin-like protein, putative O.I. H.G. S.X.
0.48 63.7 0.94 Os03g0695500 CB636267 - Protein of unknown function DUF1517 family protein 1e+0 At1g54520 unknown protein O.I. H.G. S.X.
0.44 58.1 0.95 Os11g0150100 AK068167.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 6e-2 At5g22620 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.36 44.0 0.94 Os03g0850600 AK067191.1 - Conserved hypothetical protein 6e-1 At5g42450 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.32 36.3 0.94 Os04g0514400 AK108112.1 - Peptidoglycan binding-like domain containingprotein 4e-1 At5g57070 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.31 34.5 0.92 Os01g0965400 AK104789.1 - Uridylate kinase (EC 2.7.4.-) (UK) (Uridinemonophosphate kinase) (UMP kinase) 5e-48 At3g18680 aspartate/glutamate/uridylate kinase family protein O.I. H.G. S.X.
0.28 31.1 0.94 Os01g0279700 AK067683.1 - Major facilitator superfamily protein 2e-48 At4g00370 ANTR2 O.I. H.G. S.X.
0.16 11.3 0.92 Os04g0321800 AK069106.1 - Protein phosphatase 2C-like domain containingprotein 1e-15 At5g36250 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.6 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.4 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.2 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0008652 The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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