CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0202900

Gene name
Homology with Arabidopsis Similar to At3g44950: glycine-rich protein (HF=2e-1)

Module size 30 genes

NF 0.31

%ile 33.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 0.95 Os02g0202900 9630.m01008 - Cyclin-like F-box domain containing protein 2e-1 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.52 69.6 0.97 Os10g0378450 9638.m01977 - - 5e+0 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.50 68.0 0.96 Os02g0242400 9630.m01356 - - 6e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.46 60.9 0.98 Os01g0668900 AK110235.1 - Conserved hypothetical protein 5e-1 At4g13160 unknown protein O.I. H.G. S.X.
0.46 60.9 0.96 Os03g0382000 9631.m02605 - - 1e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.44 58.1 0.97 Os03g0661200 9631.m04448 - - 9e-1 At3g03150 unknown protein O.I. H.G. S.X.
0.38 46.9 0.97 Os10g0101500 NM_194481.1 - - 3e+0 At5g63480 unknown protein O.I. H.G. S.X.
0.36 44.0 0.97 Os07g0566100 NM_186349.1 - - 3e+0 At5g43401 - O.I. H.G. S.X.
0.34 40.0 0.98 Os10g0318100 NM_195619.1 - - 1e+1 At5g62330 - O.I. H.G. S.X.
0.33 38.8 0.98 Os06g0645600 9634.m04231 - Conserved hypothetical protein 3e+0 At1g56530 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.32 36.3 0.96 Os10g0506700 9638.m03222 - - 4e-1 At3g29140 unknown protein O.I. H.G. S.X.
0.32 36.3 0.98 Os07g0294100 9635.m01948 - - 9e-2 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) O.I. H.G. S.X.
0.32 36.3 0.97 Os06g0215700 9634.m01095 - - 3e+0 At3g23245 unknown protein O.I. H.G. S.X.
0.32 36.3 0.98 Os06g0190600 9634.m00864 - - 7e-2 At3g55790 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os01g0862500 AK120019.1 - IQ calmodulin-binding region domain containingprotein 3e+0 At5g23850 - O.I. H.G. S.X.
0.30 32.7 0.98 Os01g0609700 AK109629.1 - Conserved hypothetical protein 8e-1 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.29 31.1 0.97 Os01g0873300 NM_190816.1 - - 2e+0 At2g05510 glycine-rich protein O.I. H.G. S.X.
0.27 27.5 0.96 Os08g0334830 9633.m03789 - - 1e+0 At1g23860 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) O.I. H.G. S.X.
0.26 25.6 0.98 Os02g0707500 AK107442.1 - Conserved hypothetical protein 6e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.25 24.1 0.97 Os01g0809000 AK119363.1 - Conserved hypothetical protein 4e-1 At1g12830 unknown protein O.I. H.G. S.X.
0.24 22.4 0.98 Os05g0583550 NM_191268.1 - - 7e-1 At1g47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) O.I. H.G. S.X.
0.24 22.4 0.98 Os03g0388950 9633.m02831 - - 2e-2 At1g58150 unknown protein O.I. H.G. S.X.
0.22 19.4 0.98 Os02g0524150 9630.m03070 - - 4e+0 At2g24860 chaperone protein dnaJ-related O.I. H.G. S.X.
0.21 17.9 0.98 Os10g0571700 AK063029.1 - Conserved hypothetical protein 3e-1 At1g02840 SR1 O.I. H.G. S.X.
0.21 17.9 0.97 Os12g0601866 9640.m04005 - - 5e-1 At1g33730 CYP76C5 O.I. H.G. S.X.
0.20 16.5 0.98 Os03g0676100 9631.m04592 - Protein of unknown function DUF589 family protein 2e+0 At1g78890 unknown protein O.I. H.G. S.X.
0.20 16.5 0.98 Os02g0618600 9630.m03917 - - 4e+0 At4g07526 unknown protein O.I. H.G. S.X.
0.18 13.7 0.97 Os02g0176200 9630.m00753 - - 2e-1 At5g44450 methyltransferase O.I. H.G. S.X.
0.16 11.3 0.97 Os04g0549800 9632.m04471 - - 4e-10 At2g25820 transcription factor O.I. H.G. S.X.
0.10 5.7 0.97 Os08g0207300 AK110728.1 - Conserved hypothetical protein 4e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	0.95	Os02g0202900	9630.m01008	-	Cyclin-like F-box domain containing protein	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.
0.52	69.6	0.97	Os10g0378450	9638.m01977	-	-	5e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os02g0242400	9630.m01356	-	-	6e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os01g0668900	AK110235.1	-	Conserved hypothetical protein	5e-1	At4g13160	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os03g0382000	9631.m02605	-	-	1e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os03g0661200	9631.m04448	-	-	9e-1	At3g03150	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os10g0101500	NM_194481.1	-	-	3e+0	At5g63480	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os07g0566100	NM_186349.1	-	-	3e+0	At5g43401	-	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os10g0318100	NM_195619.1	-	-	1e+1	At5g62330	-	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os06g0645600	9634.m04231	-	Conserved hypothetical protein	3e+0	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.32	36.3	0.96	Os10g0506700	9638.m03222	-	-	4e-1	At3g29140	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os07g0294100	9635.m01948	-	-	9e-2	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	O.I.	H.G.	S.X.
0.32	36.3	0.97	Os06g0215700	9634.m01095	-	-	3e+0	At3g23245	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.98	Os06g0190600	9634.m00864	-	-	7e-2	At3g55790	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os01g0862500	AK120019.1	-	IQ calmodulin-binding region domain containingprotein	3e+0	At5g23850	-	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os01g0609700	AK109629.1	-	Conserved hypothetical protein	8e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os01g0873300	NM_190816.1	-	-	2e+0	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os08g0334830	9633.m03789	-	-	1e+0	At1g23860	RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)	O.I.	H.G.	S.X.
0.26	25.6	0.98	Os02g0707500	AK107442.1	-	Conserved hypothetical protein	6e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os01g0809000	AK119363.1	-	Conserved hypothetical protein	4e-1	At1g12830	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os05g0583550	NM_191268.1	-	-	7e-1	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os03g0388950	9633.m02831	-	-	2e-2	At1g58150	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.98	Os02g0524150	9630.m03070	-	-	4e+0	At2g24860	chaperone protein dnaJ-related	O.I.	H.G.	S.X.
0.21	17.9	0.98	Os10g0571700	AK063029.1	-	Conserved hypothetical protein	3e-1	At1g02840	SR1	O.I.	H.G.	S.X.
0.21	17.9	0.97	Os12g0601866	9640.m04005	-	-	5e-1	At1g33730	CYP76C5	O.I.	H.G.	S.X.
0.20	16.5	0.98	Os03g0676100	9631.m04592	-	Protein of unknown function DUF589 family protein	2e+0	At1g78890	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.98	Os02g0618600	9630.m03917	-	-	4e+0	At4g07526	unknown protein	O.I.	H.G.	S.X.
0.18	13.7	0.97	Os02g0176200	9630.m00753	-	-	2e-1	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.16	11.3	0.97	Os04g0549800	9632.m04471	-	-	4e-10	At2g25820	transcription factor	O.I.	H.G.	S.X.
0.10	5.7	0.97	Os08g0207300	AK110728.1	-	Conserved hypothetical protein	4e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.1 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.5 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
23.1	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.5	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.9	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.011 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.013	1	GO:0006952	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.011	1	GO:0006915	A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0202900
Gene name
Homology with Arabidopsis	Similar to At3g44950: glycine-rich protein (HF=2e-1)
Module size	30 genes
NF	0.31
%ile	33.5

Co-expression analysis

Gene ID Os02g0202900 Gene name Homology with ArabidopsisSimilar to At3g44950: glycine-rich protein (HF=2e-1) Module size 30 genes NF 0.31 %ile 33.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0202900

Gene name
Homology with Arabidopsis Similar to At3g44950: glycine-rich protein (HF=2e-1)

Module size 30 genes

NF 0.31

%ile 33.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays