CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0201000

Gene name
Homology with Arabidopsis Similar to At5g25360: unknown protein (HF=7e-2)

Module size 6 genes

NF 0.55

%ile 73.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.96 Os02g0201000 AK064792.1 - Conserved hypothetical protein 7e-2 At5g25360 unknown protein O.I. H.G. S.X.
0.73 91.1 0.95 Os04g0455800 AK120652.1 - Lipoic acid synthetase, mitochondrial precursor(Lip-syn) (Lipoate synthase) (mLIP1) 6e-51 At2g20860 LIP1 (LIPOIC ACID SYNTHASE 1) O.I. H.G. S.X.
0.50 68.0 0.95 Os02g0106800 AK060675.1 - Conserved hypothetical protein 3e-6 At4g10430 - O.I. H.G. S.X.
0.46 60.9 0.96 Os04g0685800 BU673488 - Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase(EC 3.6.1.17) 1e-8 At5g06340 ATNUDX27 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 27) O.I. H.G. S.X.
0.44 58.1 0.96 Os03g0454100 AK067011.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-11 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.23 21.2 0.96 Os02g0805600 AK099516.1 - Quinone oxidoreductase 2e-1 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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