Co-expression analysis

Gene ID Os02g0196900
Gene name
Homology with ArabidopsisSimilar to At2g04540: 3-oxoacyl-(acyl-carrier-protein) synthase II, putative (HF=3e-21)
Module size 11 genes
NF 0.54
%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5573.70.95Os02g0196900AK063866.1-3-oxoacyl carrier protein synthase(3-ketoacyl-acyl carrier protein synthase)3e-21At2g045403-oxoacyl-(acyl-carrier-protein) synthase II, putativeO.I.H.G.S.X.
0.7088.40.97Os01g0559200AK102611.1-Hypothetical protein4e-2At2g46140late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.6987.90.97Os10g0561200AK066634.1-Conserved hypothetical protein4e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.6483.40.96Os07g0297300AU166460-Conserved hypothetical protein2e+0At2g25500-O.I.H.G.S.X.
0.6483.40.97Os03g0308500CB639253-DEAD/DEAH box helicase, N-terminal domaincontaining protein5e-7At2g47330DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.6079.70.97Os07g0688000AK069836.1-Metallophosphoesterase domain containing protein9e-4At4g24730calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.5371.30.97Os03g0748800BX927843-DEIH-box RNA/DNA helicase5e-11At5g04895ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid bindingO.I.H.G.S.X.
0.4863.70.97Os05g0387900AK062285.1-Conserved hypothetical protein7e-3At2g41760unknown proteinO.I.H.G.S.X.
0.4458.10.97Os12g0293100AF288216.1-Telomerase reverse transcriptase2e+0At4g22640-O.I.H.G.S.X.
0.3948.30.97Os01g0647800CA760302-Conserved hypothetical protein3e-1At3g61950basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3134.50.97Os11g0661000AK066047.1-TPR-like domain containing protein9e-3At4g14050pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.998.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.398.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM159205Inflorescence (P6, 22 - 30 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
9.798.0GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0711GO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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