CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0196200

Gene name
Homology with Arabidopsis Similar to At4g25490: CBF1 (C-REPEAT/DRE BINDING FACTOR 1) (HF=5e-1)

Module size 7 genes

NF 0.54

%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) O.I. H.G. S.X.
0.75 91.9 0.99 Os02g0451400 9630.m02380 - - 5e-2 At3g46380 unknown protein O.I. H.G. S.X.
0.53 71.3 0.99 Os03g0358500 9631.m02379 - - 3e-1 At2g14935 LCR40 (Low-molecular-weight cysteine-rich 40) O.I. H.G. S.X.
0.50 68.0 0.99 Os03g0403900 9631.m02829 - - 7e-1 At2g01300 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os07g0404100 9635.m02067 - - 5e-2 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) O.I. H.G. S.X.
0.43 55.4 0.99 Os04g0280600 9632.m01942 - - 8e-7 At5g14180 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) O.I. H.G. S.X.
0.35 41.7 0.99 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.8 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.5 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.0 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.8 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
15.7 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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