Co-expression analysis

Gene ID Os02g0187800
Gene name
Homology with ArabidopsisSimilar to At3g19450: ATCAD4 (HF=1e-2)
Module size 6 genes
NF 0.42
%ile 52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.92Os02g0187800AK105011.2-Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195)(CAD) (Brown-midrib 1 protein)1e-2At3g19450ATCAD4O.I.H.G.S.X.
0.4051.10.92Os01g0260800AK071445.1-Conserved hypothetical protein4e-1At2g19270-O.I.H.G.S.X.
0.4051.10.93Os01g0231800AK062918.1-Conserved hypothetical protein2e+0At3g16220-O.I.H.G.S.X.
0.3134.50.90Os05g0501300AK059889.1-1,4-benzoquinone reductase5e-7At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.2931.10.92Os04g0311400AK121305.1-Cysteine proteinase 1 precursor (EC 3.4.22.-)3e-13At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.2931.10.92Os02g0198500AK063694.1-Conserved hypothetical protein5e-3At1g32290unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
69.399.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.799.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.197.4GSM195222Ovary 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.797.3GSM195221Ovary 1, biological rep 1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.597.2GSM195223Ovary 3, biological rep 3GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.597.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM409422Nipponbare_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.596.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0009809The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.Link to AmiGO
0.0211GO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.Link to AmiGO
0.0201GO:0006278The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage