Co-expression analysis

Gene ID Os02g0185200
Gene name
Homology with ArabidopsisSimilar to At3g26830: PAD3 (PHYTOALEXIN DEFICIENT 3) (HF=9e-1)
Module size 6 genes
NF 0.04
%ile 2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4051.10.72Os02g0185200AK107034.1-Cytochrome P450 family protein9e-1At3g26830PAD3 (PHYTOALEXIN DEFICIENT 3)O.I.H.G.S.X.
0.2727.50.81Os09g0433000AK063243.1-Conserved hypothetical protein4e+0At2g42360zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1510.30.83Os03g0120900AK106367.1-AP2 domain containing protein RAP2.8 (Fragment)4e-18At4g01500NGA4 (NGATHA4)O.I.H.G.S.X.
0.063.00.81Os03g0144800AK103041.1-Xyloglucan galactosyltransferase2e-18At2g20370MUR3 (MURUS 3)O.I.H.G.S.X.
0.031.40.75Os05g0136200AK059282.1-CBL-interacting protein kinase 12e-4At1g48260CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)O.I.H.G.S.X.
0.010.50.77Os05g0383200AK107536.1-Conserved hypothetical protein5e-1At4g38140zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
74.599.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
42.799.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.698.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0741GO:0009987Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.Link to AmiGO
0.0291GO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1607760_at, orthologous to the query gene, Os02g0185200

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81607760_atAt3g26830flavonoid 3'5' hydroxylase /// flavonoid-3,5'-hydroxylase /// hypothetical protein LOC100242945 /// similar to flavonoid 35 hydroxylase /// similar to flavonoid 35 hydroxylase-5e+0At5g15670F-box family proteinO.I.H.G.S.X.
0.6183.21611847_atAt3g26830flavonoid-3,5'-hydroxylase-1e-1At4g19660NPR4 (NPR1-like protein 4)O.I.H.G.S.X.
0.1819.41614903_atAt3g26830hypothetical protein LOC100258657-6e-3At5g47630mtACP3 (mitochondrial acyl carrier protein 3)O.I.H.G.S.X.
0.1313.31608391_atAt3g26830hypothetical protein LOC100255376-5e-12At1g60230radical SAM domain-containing proteinO.I.H.G.S.X.
0.099.41622013_atAt3g26830hypothetical protein LOC100248617-1e-3At2g21370xylulose kinase, putativeO.I.H.G.S.X.
0.099.41613266_atAt3g26830hypothetical protein LOC100250168-2e+0At3g16690nodulin MtN3 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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