CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0185200

Gene name
Homology with Arabidopsis Similar to At3g26830: PAD3 (PHYTOALEXIN DEFICIENT 3) (HF=9e-1)

Module size 6 genes

NF 0.04

%ile 2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 51.1 0.72 Os02g0185200 AK107034.1 - Cytochrome P450 family protein 9e-1 At3g26830 PAD3 (PHYTOALEXIN DEFICIENT 3) O.I. H.G. S.X.
0.27 27.5 0.81 Os09g0433000 AK063243.1 - Conserved hypothetical protein 4e+0 At2g42360 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.15 10.3 0.83 Os03g0120900 AK106367.1 - AP2 domain containing protein RAP2.8 (Fragment) 4e-18 At4g01500 NGA4 (NGATHA4) O.I. H.G. S.X.
0.06 3.0 0.81 Os03g0144800 AK103041.1 - Xyloglucan galactosyltransferase 2e-18 At2g20370 MUR3 (MURUS 3) O.I. H.G. S.X.
0.03 1.4 0.75 Os05g0136200 AK059282.1 - CBL-interacting protein kinase 1 2e-4 At1g48260 CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) O.I. H.G. S.X.
0.01 0.5 0.77 Os05g0383200 AK107536.1 - Conserved hypothetical protein 5e-1 At4g38140 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
74.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
42.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
0.029 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g26830, orthologous to the query gene, Os02g0185200

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.46 59.8 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. H.G. S.X.
0.67 81.6 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. O.I. H.G. S.X.
0.50 65.3 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. O.I. H.G. S.X.
0.33 38.1 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 O.I. H.G. S.X.
0.23 19.3 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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