Co-expression analysis

Gene ID Os02g0176700
Gene name
Homology with ArabidopsisSimilar to At3g21180: ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) (HF=4e-47)
Module size 7 genes
NF 0.31
%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.89Os02g01767009630.m00757-Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)4e-47At3g21180ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)O.I.H.G.S.X.
0.4458.10.95Os12g0641100AK100537.1-Sodium/hydrogen exchanger family protein8e-2At1g14660ATNHX8O.I.H.G.S.X.
0.4458.10.95Os07g0409900AF194414.2-Protein kinase domain containing protein6e-33At2g17890CPK16O.I.H.G.S.X.
0.4458.10.95Os07g0511000AK070461.1-Conserved hypothetical protein2e-2At5g55060unknown proteinO.I.H.G.S.X.
0.2016.50.93Os10g0524400AK108768.1-Phospholipase D (EC 3.1.4.4)2e-19At4g11840PLDGAMMA3O.I.H.G.S.X.
0.1915.10.92Os11g0264200AK100855.1-Cyclin-like F-box domain containing protein2e-2At4g34470ASK12 (ARABIDOPSIS SKP1-LIKE 12)O.I.H.G.S.X.
0.1712.60.92Os06g0712400AK067573.1-Protein of unknown function DUF544 family protein9e-8At4g11860-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.799.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
34.299.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
22.699.3GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.099.2GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.898.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0046470The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage