CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0166600

Gene name
Homology with Arabidopsis Similar to At5g39540: - (HF=5e-2)

Module size 9 genes

NF 0.34

%ile 38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 53.9 0.91 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - O.I. H.G. S.X.
0.67 87.2 0.93 Os11g0703400 AB117996.1 - Snf7 family protein 2e-19 At2g06530 VPS2.1 O.I. H.G. S.X.
0.63 82.7 0.93 Os04g0503600 AK068552.1 - Protein kinase domain containing protein 2e+0 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) O.I. H.G. S.X.
0.47 62.3 0.94 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.47 62.3 0.94 Os04g0451900 9632.m03567 - Protein phosphatase 2C-like domain containingprotein 6e-11 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.32 36.3 0.93 Os03g0639600 AK111569.1 - Zinc-finger protein Lsd1 4e-5 At4g20380 zinc finger protein (LSD1) O.I. H.G. S.X.
0.22 19.4 0.93 Os03g0567600 AK100305.1 - Protein of unknown function DUF563 family protein 1e-3 At5g58000 - O.I. H.G. S.X.
0.21 17.9 0.95 Os06g0102700 AK071080.1 - Arm repeat-containing protein 1e-6 At3g46510 PUB13 (PLANT U-BOX 13) O.I. H.G. S.X.
0.15 10.3 0.92 Os11g0113300 BX898462 - Conserved hypothetical protein 5e-1 At4g20470 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.4 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.5 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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