CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0165300

Gene name
Homology with Arabidopsis Similar to At4g18400: unknown protein (HF=9e-6)

Module size 6 genes

NF 0.57

%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os02g0165300 9630.m00631 - - 9e-6 At4g18400 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os08g0426050 9636.m03303 - - 9e-2 At4g38950 kinesin motor family protein O.I. H.G. S.X.
0.56 76.3 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.50 68.0 0.97 Os04g0332900 9632.m02496 - - 3e+0 At5g17150 - O.I. H.G. S.X.
0.40 51.1 0.98 Os09g0356700 9637.m01615 - - 6e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.
0.40 51.1 0.98 Os09g0133300 9637.m00323 - - 7e-1 At3g62760 ATGSTF13 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.9 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.3 99.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
23.3 99.4 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
18.2 98.9 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.4 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.059 1 GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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