CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0159400

Gene name
Homology with Arabidopsis Similar to At3g46666: unknown protein (HF=8e-2)

Module size 6 genes

NF 0.54

%ile 72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.98 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.73 91.1 0.98 Os01g0818100 NM_191091.1 - - 2e-8 At5g01990 auxin efflux carrier family protein O.I. H.G. S.X.
0.73 91.1 0.98 Os02g0456000 AK119496.1 - - 4e-6 At4g01400 - O.I. H.G. S.X.
0.46 60.9 0.98 Os12g0626000 AK109499.1 - Hypothetical protein 9e-3 At3g13570 SCL30a O.I. H.G. S.X.
0.40 51.1 0.99 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.34 40.0 0.98 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.4 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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