CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0150700

Gene name
Homology with Arabidopsis Similar to At5g10650: zinc finger (C3HC4-type RING finger) family protein (HF=5e-3)

Module size 6 genes

NF 0.44

%ile 56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.91 Os02g0150700 AK120070.1 - Zn-finger, RING domain containing protein 5e-3 At5g10650 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os02g0196600 AK100988.1 - - 1e-10 At1g63440 HMA5 (HEAVY METAL ATPASE 5) O.I. H.G. S.X.
0.44 58.1 0.91 Os08g0118000 AK068379.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-8 At4g12080 DNA-binding family protein O.I. H.G. S.X.
0.40 51.1 0.91 Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic O.I. H.G. S.X.
0.33 38.8 0.91 Os05g0126100 AK099070.1 - CD9/CD37/CD63 antigen family protein 7e-1 At2g33880 HB-3 O.I. H.G. S.X.
0.31 34.5 0.90 Os04g0650900 AK064480.1 - Alpha-N-acetylglucosaminidase 3e-14 At5g13690 alpha-N-acetylglucosaminidase family / NAGLU family O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
77.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.5 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006825 The directed movement of copper (Cu) ions into, out of, within or between cells.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
0.057 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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