CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0133900

Gene name
Homology with Arabidopsis Similar to At4g24240: WRKY7 (HF=7e-1)

Module size 6 genes

NF 0.86

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.93 Os02g0133900 AK107180.1 - Eukaryotic protein of unknown function DUF829family protein 7e-1 At4g24240 WRKY7 O.I. H.G. S.X.
0.91 98.9 0.94 Os04g0557800 AB021079.1 - Ra 5e+0 At5g41315 GL3 (GLABROUS 3) O.I. H.G. S.X.
0.83 95.8 0.93 Os03g0108500 AK108704.1 - Sterol desaturase family protein 2e-4 At4g22756 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) O.I. H.G. S.X.
0.80 94.6 0.95 Os03g0259400 9631.m01481 - Leucoanthocyanidin reductase (EC 1.17.1.3)(Leucocyanidin reductase) 5e-1 At4g24700 unknown protein O.I. H.G. S.X.
0.77 93.1 0.94 Os04g0182300 9632.m00908 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e+0 At1g01900 SBTI1.1 O.I. H.G. S.X.
0.67 87.2 0.96 Os02g0103100 AK071040.1 - Conserved hypothetical protein 3e-1 At5g62500 ATEB1B (END BINDING PROTEIN 1B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.0 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006808 Any process that modulates the frequency, rate or extent of nitrogen utilization.
0.250 1 GO:0009812 The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
0.143 1 GO:0006333 The formation or destruction of chromatin structures.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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