Co-expression analysis

Gene ID Os02g0128800
Gene name
Homology with ArabidopsisSimilar to At4g27880: seven in absentia (SINA) family protein (HF=3e-15)
Module size 6 genes
NF 0.38
%ile 44.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.94Os02g0128800AK119901.1-Seven in absentia protein family protein3e-15At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.4458.10.96Os01g0898400CR282750-Hypothetical protein1e+0At5g45090AtPP2-A7 (Phloem protein 2-A7)O.I.H.G.S.X.
0.4253.90.94Os03g0157300AK103362.1-Uncharacterized Cys-rich domain containing protein6e-12At4g35920MCA1 (mid1-complementing activity 1)O.I.H.G.S.X.
0.3338.80.94Os06g0318300AK060873.1-Rho GDP-dissociation inhibitor 1 (Rho GDI-1)(AtRhoGDI1)2e-7At1g12070Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.2931.10.94Os02g0720200AK121803.1-65kD microtubule associated protein3e-1At4g26760MAP65-2O.I.H.G.S.X.
0.1611.30.95Os10g0563300AK122086.1-WD40-like domain containing protein1e-46At5g07590WD-40 repeat protein familyO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM302915emb6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
4.396.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM302914emb6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
4.196.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
3.995.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).Link to AmiGO
0.0381GO:0006511The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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