CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0126400

Gene name
Homology with Arabidopsis Similar to At2g17890: CPK16 (HF=6e-30)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 O.I. H.G. S.X.
0.77 93.1 0.91 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein O.I. H.G. S.X.
0.57 77.0 0.90 Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) O.I. H.G. S.X.
0.50 68.0 0.90 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) O.I. H.G. S.X.
0.50 68.0 0.92 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.44 58.1 0.95 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.8 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

A co-expression module including the maize gene, Zm.13002.1.S1_at, orthologous to the query gene, Os02g0126400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 Zm.13002.1.S1_at At2g17890 - - 1e-10 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.92 99.2 Zm.13401.1.A1_at At2g17890 - - 4e-19 At1g48850 EMB1144 (embryo defective 1144) O.I. H.G. S.X.
0.92 99.2 Zm.3545.1.A1_at At2g17890 translation initiation factor 5A - 4e-20 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) O.I. H.G. S.X.
0.89 96.8 Zm.3357.1.A1_at At2g17890 hypothetical protein LOC100273400 - 1e+0 At4g11020 unknown protein O.I. H.G. S.X.
0.88 96.7 Zm.3358.2.A1_at At2g17890 - - 7e+0 At2g44420 protein N-terminal asparagine amidohydrolase family protein O.I. H.G. S.X.
0.81 94.3 Zm.17307.1.S1_at At2g17890 - - 4e+0 At2g30370 allergen-related O.I. H.G. S.X.
0.80 94.0 Zm.13401.1.S1_at At2g17890 - - 4e-19 At1g48850 EMB1144 (embryo defective 1144) O.I. H.G. S.X.
0.80 94.0 Zm.3358.1.A1_at At2g17890 - - 7e+0 At4g02970 AT7SL-1 (Arabidopsis 7SL RNA 1) O.I. H.G. S.X.
0.79 92.8 Zm.2565.1.S1_at At2g17890 protein binding protein - 2e+0 At4g28050 TET7 (TETRASPANIN7) O.I. H.G. S.X.
0.77 92.1 Zm.2566.1.S1_at At2g17890 - - 6e-7 At5g56950 NAP1 O.I. H.G. S.X.
0.76 91.1 Zm.7414.1.A1_at At2g17890 - - 5e+0 At1g63830 proline-rich family protein O.I. H.G. S.X.
0.73 89.9 Zm.15540.1.S1_at At2g17890 hypothetical protein LOC100277347 - 1e-2 At1g27390 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) O.I. H.G. S.X.
0.69 86.5 Zm.6291.1.A1_at At2g17890 hypothetical protein LOC100278771 - 2e-5 At2g34920 EDA18 (embryo sac development arrest 18) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage