CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0126400

Gene name
Homology with Arabidopsis Similar to At2g17890: CPK16 (HF=6e-30)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.92 Os02g0126400 AF194413.1 - Protein kinase CPK1 6e-30 At2g17890 CPK16 O.I. H.G. S.X.
0.77 93.1 0.91 Os10g0580900 AK072734.1 - Conserved hypothetical protein 5e-8 At4g25030 unknown protein O.I. H.G. S.X.
0.57 77.0 0.90 Os02g0437200 AK065640.1 - SNAP-34 1e+0 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) O.I. H.G. S.X.
0.50 68.0 0.90 Os02g0205500 AK067907.1 - Naringenin-chalcone synthase family protein 7e-5 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) O.I. H.G. S.X.
0.50 68.0 0.92 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) O.I. H.G. S.X.
0.44 58.1 0.95 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.92	Os02g0126400	AF194413.1	-	Protein kinase CPK1	6e-30	At2g17890	CPK16	O.I.	H.G.	S.X.
0.77	93.1	0.91	Os10g0580900	AK072734.1	-	Conserved hypothetical protein	5e-8	At4g25030	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.90	Os02g0437200	AK065640.1	-	SNAP-34	1e+0	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	O.I.	H.G.	S.X.
0.50	68.0	0.90	Os02g0205500	AK067907.1	-	Naringenin-chalcone synthase family protein	7e-5	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	O.I.	H.G.	S.X.
0.50	68.0	0.92	Os03g0241300	AK072703.1	-	Hypothetical protein	1e+0	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os01g0908700	AK120427.1	-	Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A))	2e-17	At1g67800	copine-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.8 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
19.8	99.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.1	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.015	1	GO:0009058	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.206443.1.S1_at, orthologous to the query gene, Os02g0126400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.8 PtpAffx.206443.1.S1_at At2g17890 calcium dependent protein kinase 2 - 9e-44 At2g38910 CPK20 O.I. H.G. S.X.
0.60 86.0 Ptp.4648.1.S1_s_at At2g17890 actin 4 - 4e-80 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.52 79.4 Ptp.695.1.S1_s_at At2g17890 hypothetical protein - 8e-2 At4g15640 unknown protein O.I. H.G. S.X.
0.33 57.5 PtpAffx.212536.1.S1_at At2g17890 hypothetical protein - 6e-35 At5g54130 - O.I. H.G. S.X.
0.31 53.7 PtpAffx.212498.1.S1_at At2g17890 cation proton exchanger - 1e+0 At5g45770 AtRLP55 (Receptor Like Protein 55) O.I. H.G. S.X.
0.30 52.0 PtpAffx.213999.1.S1_at At2g17890 hypothetical protein - 1e+0 At5g02610 60S ribosomal protein L35 (RPL35D) O.I. H.G. S.X.
0.29 50.5 PtpAffx.37336.1.A1_at At2g17890 hypothetical protein - 8e-2 At1g50690 - O.I. H.G. S.X.
0.26 45.2 PtpAffx.206303.1.S1_at At2g17890 hypothetical protein - 9e-14 At3g45810 ferric reductase-like transmembrane component family protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.145592.1.S1_at At2g17890 hypothetical protein - 9e-45 At5g56750 Ndr family protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.201805.1.S1_at At2g17890 hypothetical protein - 3e-23 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative O.I. H.G. S.X.
0.22 38.3 PtpAffx.209438.1.S1_at At2g17890 hypothetical protein - 5e-1 At2g36325 hydrolase, acting on ester bonds O.I. H.G. S.X.
0.22 38.3 PtpAffx.224890.1.S1_at At2g17890 - - 1e-1 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.145016.1.A1_at At2g17890 - - 5e-6 At5g51030 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.202657.1.S1_at At2g17890 hypothetical protein - 1e-10 At3g24790 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.8	PtpAffx.206443.1.S1_at	At2g17890	calcium dependent protein kinase 2	-	9e-44	At2g38910	CPK20	O.I.	H.G.	S.X.
0.60	86.0	Ptp.4648.1.S1_s_at	At2g17890	actin 4	-	4e-80	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.
0.52	79.4	Ptp.695.1.S1_s_at	At2g17890	hypothetical protein	-	8e-2	At4g15640	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	PtpAffx.212536.1.S1_at	At2g17890	hypothetical protein	-	6e-35	At5g54130	-	O.I.	H.G.	S.X.
0.31	53.7	PtpAffx.212498.1.S1_at	At2g17890	cation proton exchanger	-	1e+0	At5g45770	AtRLP55 (Receptor Like Protein 55)	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.213999.1.S1_at	At2g17890	hypothetical protein	-	1e+0	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.37336.1.A1_at	At2g17890	hypothetical protein	-	8e-2	At1g50690	-	O.I.	H.G.	S.X.
0.26	45.2	PtpAffx.206303.1.S1_at	At2g17890	hypothetical protein	-	9e-14	At3g45810	ferric reductase-like transmembrane component family protein	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.145592.1.S1_at	At2g17890	hypothetical protein	-	9e-45	At5g56750	Ndr family protein	O.I.	H.G.	S.X.
0.25	43.6	PtpAffx.201805.1.S1_at	At2g17890	hypothetical protein	-	3e-23	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.209438.1.S1_at	At2g17890	hypothetical protein	-	5e-1	At2g36325	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.224890.1.S1_at	At2g17890	-	-	1e-1	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.17	29.1	PtpAffx.145016.1.A1_at	At2g17890	-	-	5e-6	At5g51030	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.202657.1.S1_at	At2g17890	hypothetical protein	-	1e-10	At3g24790	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0126400
Gene name
Homology with Arabidopsis	Similar to At2g17890: CPK16 (HF=6e-30)
Module size	6 genes
NF	0.67
%ile	90.0

Co-expression analysis

Gene ID Os02g0126400 Gene name Homology with ArabidopsisSimilar to At2g17890: CPK16 (HF=6e-30) Module size 6 genes NF 0.67 %ile 90.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0151GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0126400

Gene name
Homology with Arabidopsis Similar to At2g17890: CPK16 (HF=6e-30)

Module size 6 genes

NF 0.67

%ile 90.0

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays