CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0122500

Gene name
Homology with Arabidopsis Similar to At1g55546: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.33

%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os02g0122500 BQ908554 - Conserved hypothetical protein 9e-1 At1g55546 unknown protein O.I. H.G. S.X.
0.43 55.4 0.96 Os04g0445200 AK062427.1 - Predicted enzyme of the cupin superfamily 1e+0 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.96 Os10g0573000 AK072743.1 - Carbohydrate kinase-like protein 7e-17 At4g27600 pfkB-type carbohydrate kinase family protein O.I. H.G. S.X.
0.32 36.3 0.96 Os07g0176900 AK060861.1 - Ribose-5-phosphate isomerase precursor (EC5.3.1.6) 4e-5 At2g01290 ribose-5-phosphate isomerase O.I. H.G. S.X.
0.22 19.4 0.96 Os09g0249900 AK099860.1 - Ferredoxin-thioredoxin reductase (Fragment) 2e-18 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein O.I. H.G. S.X.
0.21 17.9 0.96 Os01g0633000 AK062051.1 - Ribosomal protein L31 family protein 4e-1 At4g03590 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.1 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0009052 The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
0.182 1 GO:0006014 The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose moiety of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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