CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0109200

Gene name
Homology with Arabidopsis Similar to At3g06180: structural constituent of ribosome (HF=3e-2)

Module size 6 genes

NF 0.09

%ile 6.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.86 Os02g0109200 AK108815.1 - Hypothetical protein 3e-2 At3g06180 structural constituent of ribosome O.I. H.G. S.X.
0.20 16.5 0.89 Os01g0612900 NM_192764.1 - Lipolytic enzyme, G-D-S-L family protein 2e-3 At4g36500 unknown protein O.I. H.G. S.X.
0.16 11.3 0.87 Os02g0683900 AK070614.1 - - 4e-2 At1g14530 THH1 (TOM THREE HOMOLOG 1) O.I. H.G. S.X.
0.09 4.9 0.88 Os05g0367400 AK108439.1 - - 2e+0 At3g06490 MYB108 (myb domain protein 108) O.I. H.G. S.X.
0.07 3.7 0.90 Os01g0695200 AK064145.1 - Conserved hypothetical protein 9e-7 At5g14550 unknown protein O.I. H.G. S.X.
0.03 1.4 0.86 Os04g0660100 AK109923.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e+0 At5g13330 Rap2.6L (related to AP2 6L) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.8 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006772 The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
0.222 1 GO:0009229 The chemical reactions and pathways resulting in the formation of thiamin diphosphate, a derivative of thiamin (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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