CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0108500

Gene name
Homology with Arabidopsis Similar to At4g23420: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-1)

Module size 38 genes

NF 0.35

%ile 39.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 0.99 Os02g0108500 AK063089.1 - Hypothetical protein 5e-1 At4g23420 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.56 76.3 0.99 Os02g0793200 AK101158.1 - TPR-like domain containing protein 1e+0 At2g45350 CRR4 (CHLORORESPIRATORY REDUCTION 4) O.I. H.G. S.X.
0.52 69.6 0.99 Os09g0327200 9637.m01313 - PCMP-H2 protein (Fragment) 3e-4 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.48 63.7 0.99 Os05g0427600 9633.m03284 - - 1e+0 At1g02440 ATARFD1A (ADP-ribosylation factor D1A) O.I. H.G. S.X.
0.44 58.1 0.99 Os05g0164600 9633.m00646 - - 9e-1 At2g28440 proline-rich family protein O.I. H.G. S.X.
0.43 55.4 0.99 Os03g0828000 9631.m06038 - - 1e-1 At2g36160 40S ribosomal protein S14 (RPS14A) O.I. H.G. S.X.
0.43 55.4 0.99 Os02g0594400 9630.m03657 - - 8e-2 At4g34120 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) O.I. H.G. S.X.
0.43 55.4 0.99 Os08g0385300 9636.m02941 - - 3e+0 At1g12660 - O.I. H.G. S.X.
0.42 53.9 0.99 Os04g0254300 AK120624.1 - Conserved hypothetical protein 3e+0 At4g00060 MEE44 (maternal effect embryo arrest 44) O.I. H.G. S.X.
0.41 52.4 0.99 Os11g0445500 9639.m02311 - - 9e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) O.I. H.G. S.X.
0.40 51.1 0.99 Os03g0603700 BI811773 - Protein prenyltransferase domain containingprotein 4e+0 At5g55840 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.39 48.3 0.99 Os11g0276100 AK108684.1 - Hypothetical protein 2e-2 At3g06430 EMB2750 (embryo defective 2750) O.I. H.G. S.X.
0.39 48.3 0.99 Os08g0429500 9636.m03331 - - 1e-1 At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.39 48.3 0.99 Os12g0160300 AK103168.1 - Homeodomain-like containing protein 1e+0 At5g64190 unknown protein O.I. H.G. S.X.
0.37 45.0 0.99 Os03g0308900 AK064183.1 - Hypothetical protein 3e+0 At4g17340 TIP2 O.I. H.G. S.X.
0.35 41.7 0.99 Os04g0291900 9632.m02077 - Protein kinase family protein 3e-4 At1g53430 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.34 40.0 0.99 Os08g0153600 9636.m00506 - Protein prenyltransferase domain containingprotein 2e-1 At5g40405 - O.I. H.G. S.X.
0.34 40.0 0.99 Os02g0614700 9630.m03872 - SPla/RYanodine receptor SPRY domain containingprotein 1e+0 At5g62500 ATEB1B (END BINDING PROTEIN 1B) O.I. H.G. S.X.
0.34 40.0 0.99 Os11g0109800 9639.m00088 - TPR-like domain containing protein 3e-1 At1g29710 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.33 38.8 0.99 Os10g0131800 NM_194728.1 - Conserved hypothetical protein 2e+0 At3g53370 DNA-binding S1FA family protein O.I. H.G. S.X.
0.32 36.3 0.99 Os08g0512200 9636.m04060 - - 2e+0 At1g05450 protease inhibitor/seed storage/lipid transfer protein (LTP)-related O.I. H.G. S.X.
0.32 36.3 0.99 Os04g0257100 9637.m01030 - - 3e+0 At5g65220 ribosomal protein L29 family protein O.I. H.G. S.X.
0.32 36.3 0.99 Os11g0109600 9639.m00085 - Uncharacterized Cys-rich domain containing protein 2e-3 At3g62890 binding O.I. H.G. S.X.
0.31 34.5 0.99 Os05g0304700 9633.m02126 - - 2e+0 At3g28590 unknown protein O.I. H.G. S.X.
0.31 34.5 0.99 Os09g0109900 9637.m00066 - - 3e+0 At5g64816 unknown protein O.I. H.G. S.X.
0.31 34.5 0.99 Os04g0591700 9632.m04881 - - 7e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.31 34.5 0.99 Os07g0217000 NM_186553.1 - - 2e-2 At5g28630 glycine-rich protein O.I. H.G. S.X.
0.30 32.7 0.99 Os07g0447150 XM_354283.1 - - 2e-2 At3g22540 unknown protein O.I. H.G. S.X.
0.30 32.7 0.99 Os05g0581300 9633.m04749 - TPR-like domain containing protein 3e-3 At3g02010 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.30 32.7 0.99 Os09g0427100 AK100693.1 - Hypothetical protein 7e-1 At1g14685 BPC2 (BASIC PENTACYSTEINE 2) O.I. H.G. S.X.
0.29 31.1 0.99 Os04g0300150 9632.m02168 - - 3e+0 At3g49180 RID3 (ROOT INITIATION DEFECTIVE 3) O.I. H.G. S.X.
0.29 31.1 0.99 Os02g0332100 9630.m02194 - - 6e-1 At5g67640 unknown protein O.I. H.G. S.X.
0.27 27.5 0.99 Os02g0583500 9630.m03564 - Conserved hypothetical protein 7e+0 At5g64360 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.26 25.6 0.99 Os07g0410600 NM_187805.1 - - 1e+0 At2g46400 WRKY46 O.I. H.G. S.X.
0.24 22.4 0.99 Os09g0241300 9637.m00412 - - 5e-1 At1g34520 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.
0.23 21.2 0.99 Os01g0880900 AK069671.1 - - 4e+0 At3g52520 unknown protein O.I. H.G. S.X.
0.19 15.1 0.99 Os07g0464700 9635.m02728 - - 3e+0 At1g12440 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.15 10.3 0.99 Os10g0436100 9638.m02565 - - 5e-1 At2g35300 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.6	0.99	Os02g0108500	AK063089.1	-	Hypothetical protein	5e-1	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os02g0793200	AK101158.1	-	TPR-like domain containing protein	1e+0	At2g45350	CRR4 (CHLORORESPIRATORY REDUCTION 4)	O.I.	H.G.	S.X.
0.52	69.6	0.99	Os09g0327200	9637.m01313	-	PCMP-H2 protein (Fragment)	3e-4	At4g02750	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.48	63.7	0.99	Os05g0427600	9633.m03284	-	-	1e+0	At1g02440	ATARFD1A (ADP-ribosylation factor D1A)	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os05g0164600	9633.m00646	-	-	9e-1	At2g28440	proline-rich family protein	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os03g0828000	9631.m06038	-	-	1e-1	At2g36160	40S ribosomal protein S14 (RPS14A)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os02g0594400	9630.m03657	-	-	8e-2	At4g34120	LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os08g0385300	9636.m02941	-	-	3e+0	At1g12660	-	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os04g0254300	AK120624.1	-	Conserved hypothetical protein	3e+0	At4g00060	MEE44 (maternal effect embryo arrest 44)	O.I.	H.G.	S.X.
0.41	52.4	0.99	Os11g0445500	9639.m02311	-	-	9e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os03g0603700	BI811773	-	Protein prenyltransferase domain containingprotein	4e+0	At5g55840	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os11g0276100	AK108684.1	-	Hypothetical protein	2e-2	At3g06430	EMB2750 (embryo defective 2750)	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os08g0429500	9636.m03331	-	-	1e-1	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os12g0160300	AK103168.1	-	Homeodomain-like containing protein	1e+0	At5g64190	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.99	Os03g0308900	AK064183.1	-	Hypothetical protein	3e+0	At4g17340	TIP2	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os04g0291900	9632.m02077	-	Protein kinase family protein	3e-4	At1g53430	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os08g0153600	9636.m00506	-	Protein prenyltransferase domain containingprotein	2e-1	At5g40405	-	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os02g0614700	9630.m03872	-	SPla/RYanodine receptor SPRY domain containingprotein	1e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os11g0109800	9639.m00088	-	TPR-like domain containing protein	3e-1	At1g29710	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os10g0131800	NM_194728.1	-	Conserved hypothetical protein	2e+0	At3g53370	DNA-binding S1FA family protein	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os08g0512200	9636.m04060	-	-	2e+0	At1g05450	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os04g0257100	9637.m01030	-	-	3e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os11g0109600	9639.m00085	-	Uncharacterized Cys-rich domain containing protein	2e-3	At3g62890	binding	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os05g0304700	9633.m02126	-	-	2e+0	At3g28590	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os09g0109900	9637.m00066	-	-	3e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os04g0591700	9632.m04881	-	-	7e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os07g0217000	NM_186553.1	-	-	2e-2	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os07g0447150	XM_354283.1	-	-	2e-2	At3g22540	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os05g0581300	9633.m04749	-	TPR-like domain containing protein	3e-3	At3g02010	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os09g0427100	AK100693.1	-	Hypothetical protein	7e-1	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os04g0300150	9632.m02168	-	-	3e+0	At3g49180	RID3 (ROOT INITIATION DEFECTIVE 3)	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os02g0332100	9630.m02194	-	-	6e-1	At5g67640	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os02g0583500	9630.m03564	-	Conserved hypothetical protein	7e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os07g0410600	NM_187805.1	-	-	1e+0	At2g46400	WRKY46	O.I.	H.G.	S.X.
0.24	22.4	0.99	Os09g0241300	9637.m00412	-	-	5e-1	At1g34520	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.
0.23	21.2	0.99	Os01g0880900	AK069671.1	-	-	4e+0	At3g52520	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.99	Os07g0464700	9635.m02728	-	-	3e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.15	10.3	0.99	Os10g0436100	9638.m02565	-	-	5e-1	At2g35300	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.0 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.9 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.0	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.9	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.2	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.1	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.019 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.019	1	GO:0030001	The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os02g0108500
Gene name
Homology with Arabidopsis	Similar to At4g23420: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-1)
Module size	38 genes
NF	0.35
%ile	39.9

Co-expression analysis

Gene ID Os02g0108500 Gene name Homology with ArabidopsisSimilar to At4g23420: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-1) Module size 38 genes NF 0.35 %ile 39.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0191GO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0108500

Gene name
Homology with Arabidopsis Similar to At4g23420: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-1)

Module size 38 genes

NF 0.35

%ile 39.9

SF Genes GO ID Process Name Link to AmiGO
0.019 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays