CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0971200

Gene name
Homology with Arabidopsis Similar to At2g28310: unknown protein (HF=4e-12)

Module size 6 genes

NF 0.41

%ile 50.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.94 Os01g0971200 AK064075.1 - Conserved hypothetical protein 4e-12 At2g28310 unknown protein O.I. H.G. S.X.
0.53 71.3 0.94 Os08g0431100 AK070049.1 - - 2e-2 At5g55600 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.95 Os03g0670100 AK071650.1 - ATP-binding protein of ABC transporter 1e-24 At1g65410 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) O.I. H.G. S.X.
0.43 55.4 0.95 Os01g0914800 AK102791.1 - Protein of unknown function DUF231 domaincontaining protein 2e-17 At4g25360 - O.I. H.G. S.X.
0.31 34.5 0.94 Os04g0405600 AK068579.1 - Protein of unknown function DUF1350 family protein 1e-12 At5g47860 unknown protein O.I. H.G. S.X.
0.22 19.4 0.95 Os04g0511600 AK073609.1 - Zn-finger, RING domain containing protein 1e+0 At3g52540 OFP18 (OVATE FAMILY PROTEIN 18) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.9 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
9.5 97.9 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
7.3 97.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.1 97.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.2 96.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.1 96.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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