CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0968400

Gene name
Homology with Arabidopsis Similar to At3g19430: late embryogenesis abundant protein-related / LEA protein-related (HF=1e-1)

Module size 10 genes

NF 0.53

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.87 Os01g0968400 BE039193 - Root cap family protein 1e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.63 82.7 0.89 Os01g0248000 AK073588.1 - Stigma-specific protein Stig1 family protein 5e-1 At1g67035 unknown protein O.I. H.G. S.X.
0.63 82.7 0.89 Os09g0440850 9637.m02353 - - 2e+0 At5g17510 unknown protein O.I. H.G. S.X.
0.53 71.3 0.90 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related O.I. H.G. S.X.
0.52 69.6 0.89 Os05g0286100 AK108829.1 - Transcriptional regulator SUPERMAN 1e-1 At4g17810 nucleic acid binding / transcription factor/ zinc ion binding O.I. H.G. S.X.
0.50 68.0 0.92 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.
0.48 63.7 0.89 Os09g0420300 AK120582.1 - Methyladenine glycosylase family protein 1e-5 At1g80850 methyladenine glycosylase family protein O.I. H.G. S.X.
0.48 63.7 0.90 Os07g0101800 9635.m00018 - - 2e-3 At5g06070 RBE (RABBIT EARS) O.I. H.G. S.X.
0.43 55.4 0.89 Os01g0719600 AK070988.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-6 At3g24450 copper-binding family protein O.I. H.G. S.X.
0.43 55.4 0.92 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.2 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.042 1 GO:0006281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
0.027 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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