CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0965300

Gene name
Homology with Arabidopsis Similar to At5g28800: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.03

%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.62 Os01g0965300 AK111057.1 - Hypothetical protein 5e+0 At5g28800 unknown protein O.I. H.G. S.X.
0.50 68.0 0.65 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.22 19.4 0.66 Os10g0186800 9638.m00950 - Nucleic acid-binding OB-fold domain containingprotein 8e+0 At5g55940 emb2731 (embryo defective 2731) O.I. H.G. S.X.
0.21 17.9 0.69 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.01 0.5 0.68 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.01 0.5 0.68 Os04g0293300 AK111082.1 - Tropinone reductase-I (EC 1.1.1.206) (TR-I)(Tropine dehydrogenase) 3e-1 At4g08593 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.0 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.3 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.19284.1.A1_at, orthologous to the query gene, Os01g0965300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 88.6 Zm.19284.1.A1_at At5g28800 hypothetical protein LOC100274557 - 2e-1 At3g51010 unknown protein O.I. H.G. S.X.
0.57 75.1 Zm.2520.1.A1_at At5g28800 hypothetical protein LOC100191754 - 5e-21 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) O.I. H.G. S.X.
0.57 75.1 Zm.1961.1.A1_at At5g28800 Glutathione S-transferase12 - 2e+0 At4g26620 sucrase-related O.I. H.G. S.X.
0.57 75.1 Zm.19172.1.A1_at At5g28800 hypothetical protein LOC100274312 - 7e-3 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.56 74.4 Zm.5373.1.S1_at At5g28800 hypothetical protein LOC100276438 - 1e+0 At5g26170 WRKY50 O.I. H.G. S.X.
0.55 71.6 Zm.16525.3.A1_x_at At5g28800 deoxy xylulose synthase 2 - 7e-44 At5g56010 HSP81-3 O.I. H.G. S.X.
0.53 69.1 Zm.5608.1.A1_at At5g28800 - - 8e+0 At4g17650 aromatic-rich family protein O.I. H.G. S.X.
0.44 55.7 Zm.4044.1.A1_a_at At5g28800 hypothetical protein LOC100273897 /// hypothetical protein LOC100274738 - 5e+0 At5g13780 GCN5-related N-acetyltransferase, putative O.I. H.G. S.X.
0.40 48.5 Zm.13032.1.A1_at At5g28800 - - 2e+0 At1g68907 - O.I. H.G. S.X.
0.30 29.8 Zm.8367.1.A1_at At5g28800 - - 5e+0 At3g57810 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.29 28.1 Zm.7746.1.A1_at At5g28800 reticulon - 4e-2 At3g19460 reticulon family protein (RTNLB11) O.I. H.G. S.X.
0.23 18.6 Zm.822.1.A1_at At5g28800 - - 2e+0 At5g60490 FLA12 O.I. H.G. S.X.
0.20 14.2 Zm.719.2.S1_at At5g28800 thioredoxin M1 - 4e-1 At1g11684 unknown protein O.I. H.G. S.X.
0.20 14.2 Zm.6232.1.A1_at At5g28800 hypothetical protein LOC100274265 - 9e-44 At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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