CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0965300

Gene name
Homology with Arabidopsis Similar to At5g28800: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.03

%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.62 Os01g0965300 AK111057.1 - Hypothetical protein 5e+0 At5g28800 unknown protein O.I. H.G. S.X.
0.50 68.0 0.65 Os11g0471200 AK066957.1 - Conserved hypothetical protein 9e-2 At1g15430 - O.I. H.G. S.X.
0.22 19.4 0.66 Os10g0186800 9638.m00950 - Nucleic acid-binding OB-fold domain containingprotein 8e+0 At5g55940 emb2731 (embryo defective 2731) O.I. H.G. S.X.
0.21 17.9 0.69 Os01g0750100 AK067329.1 - WRKY transcription factor 31 1e-11 At3g58710 WRKY69 O.I. H.G. S.X.
0.01 0.5 0.68 Os10g0498300 AK060338.1 - Epoxide hydrolase 2e+0 At5g59870 HTA6 O.I. H.G. S.X.
0.01 0.5 0.68 Os04g0293300 AK111082.1 - Tropinone reductase-I (EC 1.1.1.206) (TR-I)(Tropine dehydrogenase) 3e-1 At4g08593 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.62	Os01g0965300	AK111057.1	-	Hypothetical protein	5e+0	At5g28800	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.65	Os11g0471200	AK066957.1	-	Conserved hypothetical protein	9e-2	At1g15430	-	O.I.	H.G.	S.X.
0.22	19.4	0.66	Os10g0186800	9638.m00950	-	Nucleic acid-binding OB-fold domain containingprotein	8e+0	At5g55940	emb2731 (embryo defective 2731)	O.I.	H.G.	S.X.
0.21	17.9	0.69	Os01g0750100	AK067329.1	-	WRKY transcription factor 31	1e-11	At3g58710	WRKY69	O.I.	H.G.	S.X.
0.01	0.5	0.68	Os10g0498300	AK060338.1	-	Epoxide hydrolase	2e+0	At5g59870	HTA6	O.I.	H.G.	S.X.
0.01	0.5	0.68	Os04g0293300	AK111082.1	-	Tropinone reductase-I (EC 1.1.1.206) (TR-I)(Tropine dehydrogenase)	3e-1	At4g08593	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.0 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.3 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
31.0	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.3	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.9	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.4	98.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.76466.1.A1_at, orthologous to the query gene, Os01g0965300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.8 PtpAffx.76466.1.A1_at At5g28800 hypothetical protein - 5e-2 At1g51440 lipase class 3 family protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.13344.3.S1_s_at At5g28800 - - 5e-6 At1g01720 ATAF1 O.I. H.G. S.X.
0.26 45.2 PtpAffx.74520.2.S1_at At5g28800 hypothetical protein - 8e-21 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) O.I. H.G. S.X.
0.26 45.2 PtpAffx.212242.1.S1_at At5g28800 cationic amino acid transporter - 1e-64 At3g03720 CAT4 (CATIONIC AMINO ACID TRANSPORTER 4) O.I. H.G. S.X.
0.24 41.8 PtpAffx.211957.1.S1_at At5g28800 hypothetical protein - 6e-37 At4g12770 heat shock protein binding O.I. H.G. S.X.
0.21 36.5 PtpAffx.17383.1.S1_s_at At5g28800 hypothetical protein - 9e-59 At1g01820 PEX11C (PEROXIN 11C) O.I. H.G. S.X.
0.20 34.6 PtpAffx.205626.1.S1_at At5g28800 hypothetical protein - 1e-82 At1g71696 SOL1 (SUPPRESSOR OF LLP1 1) O.I. H.G. S.X.
0.20 34.6 PtpAffx.36571.1.S1_s_at At5g28800 hypothetical protein - 2e+0 At3g17930 unknown protein O.I. H.G. S.X.
0.20 34.6 PtpAffx.214193.1.S1_at At5g28800 hypothetical protein - 8e-71 At2g25520 phosphate translocator-related O.I. H.G. S.X.
0.20 34.6 Ptp.3931.1.A1_a_at At5g28800 hypothetical protein - 3e-33 At1g49040 SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) O.I. H.G. S.X.
0.20 34.6 PtpAffx.125257.1.S1_at At5g28800 hypothetical protein - 5e-6 At5g57060 unknown protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.90084.1.S1_s_at At5g28800 - - 1e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) O.I. H.G. S.X.
0.19 32.7 PtpAffx.65641.1.A1_at At5g28800 hypothetical protein - 3e+0 At4g27020 unknown protein O.I. H.G. S.X.
0.19 32.7 Ptp.4864.1.S1_at At5g28800 hypothetical protein - 3e-24 At5g47040 LON2 (LON PROTEASE 2) O.I. H.G. S.X.
0.19 32.7 PtpAffx.200718.1.S1_at At5g28800 hypothetical protein - 4e-12 At5g12430 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.220101.1.S1_x_at At5g28800 hypothetical protein - 2e-85 At4g19040 EDR2 O.I. H.G. S.X.
0.18 30.8 PtpAffx.211136.1.S1_s_at At5g28800 hypothetical protein - 2e-27 At3g03560 unknown protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.6289.1.A1_a_at At5g28800 - - 1e-4 At1g74440 unknown protein O.I. H.G. S.X.
0.16 26.9 PtpAffx.207201.1.S1_at At5g28800 hypothetical protein - 3e-5 At3g19780 - O.I. H.G. S.X.
0.16 26.9 PtpAffx.219972.1.S1_at At5g28800 hypothetical protein - 1e-38 At5g47490 unknown protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.141342.1.S1_at At5g28800 hypothetical protein - 8e-37 At2g21520 transporter O.I. H.G. S.X.
0.15 25.3 PtpAffx.216377.1.S1_at At5g28800 hypothetical protein - 8e-4 At3g59770 SAC9 O.I. H.G. S.X.
0.14 23.5 PtpAffx.201263.1.S1_at At5g28800 hypothetical protein - 4e-3 At5g55390 EDM2 O.I. H.G. S.X.
0.14 23.5 PtpAffx.214289.1.S1_at At5g28800 hypothetical protein - 3e-14 At4g31570 unknown protein O.I. H.G. S.X.
0.12 19.6 PtpAffx.216382.1.S1_at At5g28800 hypothetical protein - 3e-7 At5g49960 binding / catalytic O.I. H.G. S.X.
0.11 18.1 PtpAffx.36802.2.S1_at At5g28800 hypothetical protein - 1e-39 At3g17000 UBC32 (ubiquitin-conjugating enzyme 32) O.I. H.G. S.X.
0.10 16.3 PtpAffx.214501.1.S1_at At5g28800 hypothetical protein - 1e-11 At2g13100 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative O.I. H.G. S.X.
0.10 16.3 Ptp.3354.1.A1_s_at At5g28800 hypothetical protein - 6e-43 At5g26751 ATSK11 O.I. H.G. S.X.
0.10 16.3 PtpAffx.24972.1.A1_s_at At5g28800 hypothetical protein - 7e-9 At4g02680 EOL1 (ETO1-LIKE 1) O.I. H.G. S.X.
0.10 16.3 PtpAffx.2338.1.A1_at At5g28800 hypothetical protein - 2e-124 At1g71820 SEC6 O.I. H.G. S.X.
0.09 14.6 PtpAffx.147021.1.A1_at At5g28800 hypothetical protein - 6e-9 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) O.I. H.G. S.X.
0.09 14.6 PtpAffx.109609.1.S1_at At5g28800 hypothetical protein - 4e-4 At5g47790 forkhead-associated domain-containing protein / FHA domain-containing protein O.I. H.G. S.X.
0.08 12.9 PtpAffx.68278.1.S1_s_at At5g28800 hypothetical protein - 5e+0 At5g41990 WNK8 (WITH NO LYSINE (K) KINASE 8) O.I. H.G. S.X.
0.05 8.3 Ptp.7972.2.S1_at At5g28800 hypothetical protein - 9e-45 At5g50180 protein kinase, putative O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.8	PtpAffx.76466.1.A1_at	At5g28800	hypothetical protein	-	5e-2	At1g51440	lipase class 3 family protein	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.13344.3.S1_s_at	At5g28800	-	-	5e-6	At1g01720	ATAF1	O.I.	H.G.	S.X.
0.26	45.2	PtpAffx.74520.2.S1_at	At5g28800	hypothetical protein	-	8e-21	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.
0.26	45.2	PtpAffx.212242.1.S1_at	At5g28800	cationic amino acid transporter	-	1e-64	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	O.I.	H.G.	S.X.
0.24	41.8	PtpAffx.211957.1.S1_at	At5g28800	hypothetical protein	-	6e-37	At4g12770	heat shock protein binding	O.I.	H.G.	S.X.
0.21	36.5	PtpAffx.17383.1.S1_s_at	At5g28800	hypothetical protein	-	9e-59	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.205626.1.S1_at	At5g28800	hypothetical protein	-	1e-82	At1g71696	SOL1 (SUPPRESSOR OF LLP1 1)	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.36571.1.S1_s_at	At5g28800	hypothetical protein	-	2e+0	At3g17930	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.214193.1.S1_at	At5g28800	hypothetical protein	-	8e-71	At2g25520	phosphate translocator-related	O.I.	H.G.	S.X.
0.20	34.6	Ptp.3931.1.A1_a_at	At5g28800	hypothetical protein	-	3e-33	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.125257.1.S1_at	At5g28800	hypothetical protein	-	5e-6	At5g57060	unknown protein	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.90084.1.S1_s_at	At5g28800	-	-	1e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.65641.1.A1_at	At5g28800	hypothetical protein	-	3e+0	At4g27020	unknown protein	O.I.	H.G.	S.X.
0.19	32.7	Ptp.4864.1.S1_at	At5g28800	hypothetical protein	-	3e-24	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.200718.1.S1_at	At5g28800	hypothetical protein	-	4e-12	At5g12430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.220101.1.S1_x_at	At5g28800	hypothetical protein	-	2e-85	At4g19040	EDR2	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.211136.1.S1_s_at	At5g28800	hypothetical protein	-	2e-27	At3g03560	unknown protein	O.I.	H.G.	S.X.
0.18	30.8	PtpAffx.6289.1.A1_a_at	At5g28800	-	-	1e-4	At1g74440	unknown protein	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.207201.1.S1_at	At5g28800	hypothetical protein	-	3e-5	At3g19780	-	O.I.	H.G.	S.X.
0.16	26.9	PtpAffx.219972.1.S1_at	At5g28800	hypothetical protein	-	1e-38	At5g47490	unknown protein	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.141342.1.S1_at	At5g28800	hypothetical protein	-	8e-37	At2g21520	transporter	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.216377.1.S1_at	At5g28800	hypothetical protein	-	8e-4	At3g59770	SAC9	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.201263.1.S1_at	At5g28800	hypothetical protein	-	4e-3	At5g55390	EDM2	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.214289.1.S1_at	At5g28800	hypothetical protein	-	3e-14	At4g31570	unknown protein	O.I.	H.G.	S.X.
0.12	19.6	PtpAffx.216382.1.S1_at	At5g28800	hypothetical protein	-	3e-7	At5g49960	binding / catalytic	O.I.	H.G.	S.X.
0.11	18.1	PtpAffx.36802.2.S1_at	At5g28800	hypothetical protein	-	1e-39	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.
0.10	16.3	PtpAffx.214501.1.S1_at	At5g28800	hypothetical protein	-	1e-11	At2g13100	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	O.I.	H.G.	S.X.
0.10	16.3	Ptp.3354.1.A1_s_at	At5g28800	hypothetical protein	-	6e-43	At5g26751	ATSK11	O.I.	H.G.	S.X.
0.10	16.3	PtpAffx.24972.1.A1_s_at	At5g28800	hypothetical protein	-	7e-9	At4g02680	EOL1 (ETO1-LIKE 1)	O.I.	H.G.	S.X.
0.10	16.3	PtpAffx.2338.1.A1_at	At5g28800	hypothetical protein	-	2e-124	At1g71820	SEC6	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.147021.1.A1_at	At5g28800	hypothetical protein	-	6e-9	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.
0.09	14.6	PtpAffx.109609.1.S1_at	At5g28800	hypothetical protein	-	4e-4	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.
0.08	12.9	PtpAffx.68278.1.S1_s_at	At5g28800	hypothetical protein	-	5e+0	At5g41990	WNK8 (WITH NO LYSINE (K) KINASE 8)	O.I.	H.G.	S.X.
0.05	8.3	Ptp.7972.2.S1_at	At5g28800	hypothetical protein	-	9e-45	At5g50180	protein kinase, putative	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0965300
Gene name
Homology with Arabidopsis	Similar to At5g28800: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.03
%ile	2.0

Co-expression analysis

Gene ID Os01g0965300 Gene name Homology with ArabidopsisSimilar to At5g28800: unknown protein (HF=5e+0) Module size 6 genes NF 0.03 %ile 2.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0965300

Gene name
Homology with Arabidopsis Similar to At5g28800: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.03

%ile 2.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays